BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4467063 =	128 (1.000)	7 (0.060)	5/170	NT	5.3%	coding (184/948 nt)	treR	trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor
*	?	NC_000913	4467094 =	126 (1.030)	7 (0.060)	5/170	NT	5.3%	coding (153/948 nt)	treR	trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor
Rejected: Frequency below cutoff threshold.

Only 100 of 180 total aligned reads displayed.

CATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAT  >  NC_000913/4466995‑4467193

gcggcgtgagccagctcacccgcgagcgtgttgaagcagtgatgaatcagcatggattttccccttccCGCTTTGCCCACGCATAGCGCGCGCAGAGCgg                                                                                                     >  1:1787877‑M1/69‑100 (MQ=255)

caTGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCgg                                                                                                     >  2:2572125/1‑100 (MQ=255)

caTGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCgg                                                                                                     <  2:3007111/100‑1 (MQ=255)

  tGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGa                                                                                                   >  2:1459034/1‑100 (MQ=255)

    gTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAg                                                                                                 >  1:392184/1‑100 (MQ=255)

    gTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAg                                                                                                 >  2:2261996/1‑100 (MQ=255)

    gTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAg                                                                                                 >  2:62941/1‑100 (MQ=255)

     tttGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAgg                                                                                                >  2:575510/1‑100 (MQ=255)

      tgagccagctcacccgcgagcgtgttgaagcagtgatgaatcagcatggattttccccttccCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAggg                                                                                               >  1:1143337‑M1/63‑100 (MQ=255)

       tGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAgggg                                                                                              >  2:3072870/1‑100 (MQ=255)

        gAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGa                                                                                             >  1:1959760/1‑100 (MQ=255)

         aaCGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGaa                                                                                            <  2:385721/100‑1 (MQ=255)

         aaCGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGaa                                                                                            >  2:787046/1‑100 (MQ=255)

           cGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGaaaa                                                                                          >  1:1401499/1‑100 (MQ=255)

            ggagagaTTTTCTGACAACGAATCCCGACGGGTAACAATGATGGTGAACAACTTATCGCTTTGCCCACGCATAGCGCGTGCAGAGCGGGAAGGGGaa                                                                                            <  1:2885070/94‑1 (MQ=255)

              cGAGATTTGCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATcc                                                                                       <  1:1404075/100‑1 (MQ=255)

                   ttttCTGACAACGAATCCAGTCGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCt                                                                                  <  1:199431/100‑1 (MQ=255)

                     ttCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGa                                                                                <  1:2497949/100‑1 (MQ=255)

                        tGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGAttn                                                                             <  1:2302625/100‑2 (MQ=255)

                        tGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATtc                                                                             <  1:310309/100‑1 (MQ=255)

                         gACAACGAATCCAGACGGGTAACAATTATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATtca                                                                            <  2:705601/100‑1 (MQ=255)

                          aCAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATtca                                                                            <  1:831169/99‑1 (MQ=255)

                           cAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATtcatc                                                                          >  2:967325/1‑100 (MQ=255)

                             aCGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCAc                                                                        >  2:482668/1‑100 (MQ=255)

                                  tCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCtt                                                                   >  2:2217370/1‑100 (MQ=255)

                                  tCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCtt                                                                   >  2:1298232/1‑100 (MQ=255)

                                   ccAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTc                                                                  <  1:1665910/100‑1 (MQ=255)

                                   ccAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTc                                                                  <  1:3131543/100‑1 (MQ=255)

                                    cAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCa                                                                 >  2:3394362/1‑100 (MQ=255)

                                     aGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCaa                                                                <  2:3064709/100‑1 (MQ=255)

                                     aGACGGGTAACAATGATGGCGACCACTCTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAAGTGAAAATCCATGCTGATTCATCACTGCTTCaa                                                                <  1:1122074/100‑1 (MQ=255)

                                      gACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGAGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAac                                                               >  1:624289/1‑100 (MQ=255)

                                      gACGGGAAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAac                                                               <  1:234201/100‑1 (MQ=255)

                                       aCGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAaca                                                              <  1:909964/100‑1 (MQ=255)

                                        cGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAacac                                                             >  2:2372068/1‑100 (MQ=255)

                                          ggTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGc                                                           >  1:130455/1‑100 (MQ=255)

                                           gTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCt                                                          >  2:2903257/1‑100 (MQ=255)

                                           gTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCt                                                          <  2:157786/100‑1 (MQ=255)

                                            tAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTc                                                         >  2:176350/1‑100 (MQ=255)

                                                aaTGATGGCGACCACTTTATCGCTTTGCCCACTCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCgg                                                     >  2:3278970/1‑100 (MQ=255)

                                                 atgatgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCggg                                                    >  1:291313/1‑100 (MQ=255)

                                                 atgatgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCggg                                                    >  1:3228212/1‑100 (MQ=255)

                                                   gatgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTg                                                  >  1:1211226/1‑100 (MQ=255)

                                                   gatgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTg                                                  <  2:1401511/100‑1 (MQ=255)

                                                        cGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTg                                             <  1:2276879/100‑1 (MQ=255)

                                                        cGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTg                                             >  1:799682/1‑100 (MQ=255)

                                                        cGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTg                                             <  2:3325456/100‑1 (MQ=255)

                                                         gACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTgg                                            >  2:2985847/1‑100 (MQ=255)

                                                          aCCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGc                                           <  2:2041905/100‑1 (MQ=255)

                                                           ccACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGc                                           >  1:2589918/1‑99 (MQ=255)

                                                           ccACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCt                                          >  2:2872066/1‑100 (MQ=255)

                                                           ccACTTTATCGCTTTGCCCACGCAGAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCt                                          <  2:2808302/100‑1 (MQ=255)

                                                            cACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGTAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTc                                         >  1:952261/1‑100 (MQ=255)

                                                             aCTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCa                                        >  2:2846698/1‑100 (MQ=255)

                                                             aCTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCa                                        >  1:743975/1‑100 (MQ=255)

                                                              cTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCAc                                       >  2:14817/1‑100 (MQ=255)

                                                                  cccgctctgcgcgcgctatgcgtgggcaaagcgGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCAcgccg                                   >  2:1628042‑M2/34‑100 (MQ=255)

                                                                  cccgctctgcgcgcgctatgcgtgggcaaagcgGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCAcgccg                                   >  1:2760995‑M2/34‑100 (MQ=255)

                                                                   tCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCAcgccgc                                  <  1:2737373/100‑1 (MQ=255)

                                                                   tCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGCGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCAcgccgc                                  <  2:498912/100‑1 (MQ=255)

                                                                   ccgctctgcgcgcgctatgcgtgggcaaagcgGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCAcgccgc                                  >  1:1903166‑M2/33‑100 (MQ=255)

                                                                    cgctctgcgcgcgctatgcgtgggcaaagcgGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCt                                 >  1:1734286‑M2/32‑100 (MQ=255)

                                                                     gtTTTGCCCGCGCATAGCGCGCGCAGCGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACGCGCTCGCGAGTGTGCTGGCTGACGCCGCtt                                >  1:1876003‑M1/3‑100 (MQ=255)

                                                                     GCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCtt                                <  1:3317899‑M1/100‑1 (MQ=255)

                                                                     GCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCtt                                <  2:1279592‑M1/100‑1 (MQ=255)

                                                                        ttGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCg                             <  2:1375892/100‑1 (MQ=255)

                                                                         tGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGt                            <  1:62941/100‑1 (MQ=255)

                                                                         tGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGt                            <  2:3088978/100‑1 (MQ=255)

                                                                         tGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAAAACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGt                            >  2:2887965/1‑100 (MQ=255)

                                                                          gCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGtt                           >  2:314618/1‑100 (MQ=255)

                                                                           cccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTa                          >  2:534627/1‑100 (MQ=255)

                                                                            ccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTAt                         >  1:2061974/1‑100 (MQ=255)

                                                                            ccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTAt                         <  2:1037579/100‑1 (MQ=255)

                                                                             cACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTAtt                        >  1:785525/1‑100 (MQ=255)

                                                                              aCGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTAtcc                       <  2:2349990/100‑3 (MQ=255)

                                                                              aCGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTc                       <  2:2470744/100‑1 (MQ=255)

                                                                              aCGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTc                       >  2:1609191/1‑100 (MQ=255)

                                                                               cGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCa                      <  2:722936/100‑1 (MQ=255)

                                                                               cGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCa                      >  2:3140897/1‑100 (MQ=255)

                                                                                  aTAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCa                   <  1:2993268/100‑1 (MQ=255)

                                                                                     gcgcgcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGGTATTCAGCAccc                >  2:1370483/1‑100 (MQ=255)

                                                                                      cgcgcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCg               <  1:1800153/100‑1 (MQ=255)

                                                                                       gcgcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCgg              <  1:2572106/100‑1 (MQ=255)

                                                                                        cgcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGTTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCggg             <  1:2217352/100‑1 (MQ=255)

                                                                                        cgcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCggg             >  2:1732225/1‑100 (MQ=255)

                                                                                          cgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGaa           >  1:3456520/1‑100 (MQ=255)

                                                                                            cAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAAc         <  2:1905441/100‑1 (MQ=255)

                                                                                            cAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAAc         <  1:2607929/100‑1 (MQ=255)

                                                                                            cAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAAc         >  1:215819/1‑100 (MQ=255)

                                                                                            cAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAAc         <  2:828459/100‑1 (MQ=255)

                                                                                              gagCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTg       <  1:1459021/100‑1 (MQ=255)

                                                                                              gagCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTg       >  1:1154904/1‑100 (MQ=255)

                                                                                               agcgGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTg       >  2:1922158‑M2/5‑99 (MQ=255)

                                                                                                gcgGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTa     >  2:419615‑M2/4‑100 (MQ=255)

                                                                                                 cgGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAg    <  1:1605133‑M2/98‑1 (MQ=255)

                                                                                                 cgGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAg    <  2:215485‑M2/98‑1 (MQ=255)

                                                                                                 cgGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAg    <  2:215821‑M2/98‑1 (MQ=255)

                                                                                                 cgGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAg    <  1:289079‑M2/98‑1 (MQ=255)

                                                                                                   ggAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGa   >  1:2052503/1‑99 (MQ=255)

                                                                                                   ggAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAt  >  2:1202114/1‑100 (MQ=255)

CATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAT  >  NC_000913/4466995‑4467193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.