Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,156,112 T→C 62.4% A117A (GCT→GCC holB → DNA polymerase III, delta prime subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,156,1120TC62.4% 122.3 / 131.6 130A117A (GCT→GCCholBDNA polymerase III, delta prime subunit
Reads supporting (aligned to +/- strand):  ref base T (22/27);  new base C (39/42);  total (61/69)
Fisher's exact test for biased strand distribution p-value = 8.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01

Only 100 of 137 total aligned reads displayed.

AAAATACGCTGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTACCCGCGAGCCTGAACGT  >  NC_000913/1156015‑1156211
                                                                                                 |                                                                                                   
aaaaTACGCTGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGAtgctgc                                                                                                   >  2:3176385/1‑100 (MQ=255)
 aaaTACGCTGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATgccgcc                                                                                                  <  2:1037759/100‑1 (MQ=255)
 aaaTACGCTGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATgccgcc                                                                                                  <  1:2448634/100‑1 (MQ=255)
 aaaTACGCTGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATgccgcc                                                                                                  <  2:691465/100‑1 (MQ=255)
   aTACGCTGGGCGTTGGTGCGGTACGTGAGTTCACCGAATAGCTGGATGAGCGCGCACGCGTGGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGcc                                                                                                  >  1:1883121/1‑98 (MQ=255)
      cGCTGTGCGTTGATGCGGTACGTGAGGTCTCCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTa                                                                                               <  1:1680640/98‑1 (MQ=255)
      cGCTGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACt                                                                                             >  2:2125720/1‑100 (MQ=255)
      cGCTGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACt                                                                                             <  2:3176695/100‑1 (MQ=255)
       gCTGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTa                                                                                            <  1:1369209/100‑1 (MQ=255)
       gCTGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTa                                                                                            >  2:1496267/1‑100 (MQ=255)
         tGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAAc                                                                                          <  1:2284305/100‑1 (MQ=255)
         tGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAAc                                                                                          <  2:1926011/100‑1 (MQ=255)
         tGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGCCGTTTGGGTAACCGATGCCGCCTTACTAAc                                                                                          >  1:1429419/1‑100 (MQ=255)
          gggCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAAcc                                                                                         >  1:2110988/1‑100 (MQ=255)
           ggCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCg                                                                                        <  1:1278189/100‑1 (MQ=255)
            gCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAAc                                                                                          <  1:1419577/97‑1 (MQ=255)
             cGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGGAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGAc                                                                                      <  1:2938960/100‑1 (MQ=255)
             cGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGATGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGAc                                                                                      >  1:2217401/1‑100 (MQ=255)
               ttGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGAcgc                                                                                    <  1:3233664/100‑1 (MQ=255)
                tGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGAcgcc                                                                                   >  1:2663163/1‑100 (MQ=255)
                 gATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGAcgccg                                                                                  >  2:2426605/1‑100 (MQ=255)
                  aTGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGAcgccgc                                                                                 <  1:287546/100‑1 (MQ=255)
                  aTGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGAAACCGATGCCGCCTTACTAACCGAcgccgc                                                                                 >  2:3079976/1‑100 (MQ=255)
                   tGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCcgcg                                                                                <  2:2811419/100‑1 (MQ=255)
                    gCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCgg                                                                               <  2:1138266/100‑1 (MQ=255)
                     nggTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGc                                                                              >  1:1800410/2‑100 (MQ=255)
                     cGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGc                                                                              <  2:2271310/100‑1 (MQ=255)
                         aCGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAAc                                                                          <  1:970033/100‑1 (MQ=255)
                         aCGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAAc                                                                          <  2:1270360/100‑1 (MQ=255)
                         aCGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAAc                                                                          >  2:405340/1‑100 (MQ=255)
                         aCGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAAc                                                                          <  1:3402404/100‑1 (MQ=255)
                          cGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACg                                                                         >  2:3196683/1‑100 (MQ=255)
                           gTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGc                                                                        <  2:1312119/100‑1 (MQ=255)
                            tGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCa                                                                       <  2:2946572/100‑1 (MQ=255)
                            tGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCa                                                                       <  1:1837749/100‑1 (MQ=255)
                             gAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCAt                                                                      <  1:168501/100‑1 (MQ=255)
                              aGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTCGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCAtt                                                                     <  1:1929111/100‑1 (MQ=255)
                               ggTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTg                                                                    >  1:1431637/1‑100 (MQ=255)
                                gTCACCGAAATGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGc                                                                   <  1:2264339/100‑1 (MQ=255)
                                gTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGc                                                                   >  2:1319013/1‑100 (MQ=255)
                                gTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGc                                                                   <  2:89828/100‑1 (MQ=255)
                                gTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGc                                                                   <  2:1237348/100‑1 (MQ=255)
                                   aCCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGa                                                                <  1:219296/100‑1 (MQ=255)
                                    ccGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGaa                                                               >  2:90373/1‑100 (MQ=255)
                                      gAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAAAAAAATGCTGaaaa                                                             <  1:1967064/100‑1 (MQ=255)
                                       aaaaGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAAc                                                            <  1:349183/100‑1 (MQ=255)
                                        aaaGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACg                                                           <  2:2184098/100‑1 (MQ=255)
                                           gCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCtt                                                        <  2:2549898/100‑1 (MQ=255)
                                           gCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCtt                                                        >  1:2942848/1‑100 (MQ=255)
                                            cTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTg                                                       <  2:2347669/100‑1 (MQ=255)
                                            cTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTg                                                       >  1:766293/1‑100 (MQ=255)
                                            cTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTg                                                       >  1:2570040/1‑100 (MQ=255)
                                             tGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGa                                                      >  1:2694451/1‑100 (MQ=255)
                                             tGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGa                                                      >  2:458099/1‑100 (MQ=255)
                                             tGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGa                                                      >  2:1490969/1‑100 (MQ=255)
                                              gAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGaa                                                     >  2:1596385/1‑100 (MQ=255)
                                               aaTGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAag                                                    >  2:1583481/1‑100 (MQ=255)
                                                 tGAGCTCGTCCGCTTAGGTGGTGCGAAAGTCCTTTGAGTAACCTATGCTTCCTTACTACCCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAagag                                                  <  1:3347179/100‑1 (MQ=255)
                                                 tGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAagag                                                  >  2:2512346/1‑100 (MQ=255)
                                                 tGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAagag                                                  >  1:2518010/1‑100 (MQ=255)
                                                 tGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAagag                                                  <  1:1250540/100‑1 (MQ=255)
                                                      acgcacgcTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGccacc                                             <  2:1085373/100‑1 (MQ=255)
                                                       cgcacgcTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGccacca                                            >  1:833228/1‑100 (MQ=255)
                                                         cacgcTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGTCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACcagc                                          <  1:2425761/100‑1 (MQ=255)
                                                         cacgcTNAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTNACNCATTNCTGAAAACGCTTGAAGAGCCACcagc                                          <  2:2655678/100‑1 (MQ=255)
                                                           cgcTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACcagc                                          >  1:369584/1‑98 (MQ=255)
                                                           cgcTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACcagcag                                        <  1:2367836/100‑1 (MQ=255)
                                                               tAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAAc                                    >  1:3353902/1‑100 (MQ=255)
                                                                aGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACt                                   <  1:815394/100‑1 (MQ=255)
                                                                 ggtggtGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACtt                                  >  1:1083509/1‑100 (MQ=255)
                                                                  gtggtgCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTg                                 <  2:1907846/100‑1 (MQ=255)
                                                                   tggtgCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTgg                                <  1:3176361/100‑1 (MQ=255)
                                                                   tggtgCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATGGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTgg                                <  1:1849408/100‑1 (MQ=255)
                                                                     gtgacaaaGTCGTTTGGGTAACAGATGCTGCCTAAATACACGACGCCACGGCTAACGCACTGCTGAAAACGCTTGAAGAGCAACCAGCAGAAACTAGGtt                              <  1:506143/95‑1 (MQ=255)
                                                                     gtgCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAACAGAAACTTGGtt                              <  1:967844/100‑1 (MQ=255)
                                                                      tgCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGtt                              >  2:1494655/1‑99 (MQ=255)
                                                                      tgCGAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGttt                             >  2:1652696/1‑100 (MQ=255)
                                                                        cGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGttttt                           >  2:720617/1‑100 (MQ=255)
                                                                         gAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTc                          >  2:1006188/1‑100 (MQ=255)
                                                                         gAAAGTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTc                          <  2:1714554/100‑1 (MQ=255)
                                                                          aaaGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTcc                         <  1:2337455/100‑1 (MQ=255)
                                                                          aaaGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTcc                         <  1:1059870/100‑1 (MQ=255)
                                                                             gTCGTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTgg                      >  2:175915/1‑100 (MQ=255)
                                                                               cGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCt                    >  2:3045571/1‑100 (MQ=255)
                                                                               cGTTTGGGTAACCGATACTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCt                    >  2:2869883/1‑100 (MQ=255)
                                                                                gTTTGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTa                   >  2:785045/1‑100 (MQ=255)
                                                                                 tttGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTAc                  >  1:1088007/1‑100 (MQ=255)
                                                                                  ttGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTAcn                 <  2:1800426/100‑2 (MQ=255)
                                                                                   tGGGTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTAccc                >  1:518314/1‑100 (MQ=255)
                                                                                    gggTAACCGATGCTACCTTGCTAACCGACGCCGCGGCTAACTCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTACCcg               >  1:2889263/1‑100 (MQ=255)
                                                                                     ggTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTACCcgc              >  2:2322070/1‑100 (MQ=255)
                                                                                     ggTAACCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTACCcgc              >  2:3309109/1‑100 (MQ=255)
                                                                                      gTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAACCACCAGCAGAAACTTGGTTTTTCCTGGCTACCcgcg             >  2:1117161/1‑100 (MQ=255)
                                                                                        aaCCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTACCCGCGAg           >  2:3408629/1‑100 (MQ=255)
                                                                                        aaCCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTACCCGCGAg           <  1:2125703/100‑1 (MQ=255)
                                                                                        aaCCGATGCCGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTACCCGCGAg           >  2:2716531/1‑100 (MQ=255)
                                                                                          ccGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTACCCGCGAGcc         >  1:334448/1‑100 (MQ=255)
                                                                                            gATGCCGCCTTACTAACCGACGCCGCGGCTAAGGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTACCCGCGAGCCTg       <  1:2426586/100‑1 (MQ=255)
                                                                                                 tgcCTTACTAACCGACGCCGCGGCTAACGCATTGCTGCAACCGCTTGAAGAGCCACCAGCAGAAACTTGGTGTTTCCTGGCTACCCGCGAGCCTGAACGt  >  2:505421/1‑100 (MQ=255)
                                                                                                 tgcCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTACCCGCGAGCCTGAACGt  >  2:2881644/1‑100 (MQ=255)
                                                                                                 |                                                                                                   
AAAATACGCTGGGCGTTGATGCGGTACGTGAGGTCACCGAAAAGCTGAATGAGCACGCACGCTTAGGTGGTGCGAAAGTCGTTTGGGTAACCGATGCTGCCTTACTAACCGACGCCGCGGCTAACGCATTGCTGAAAACGCTTGAAGAGCCACCAGCAGAAACTTGGTTTTTCCTGGCTACCCGCGAGCCTGAACGT  >  NC_000913/1156015‑1156211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: