| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2884568 = | 172 (1.570) | 6 (0.060) | 6/180 | 12.5 | 3.9% | coding (2652/2667 nt) | ygcB | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| ? | NC_000913 | 2884590 = | 138 (1.390) | coding (2630/2667 nt) | ygcB | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GGGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2884675‑2884568‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcatccctTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACT > NC_000913/2884590‑2884688 GGGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAG < 2:359107/100‑1GGGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAG > 1:1753926/1‑100GGGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAG < 1:2329849/100‑1 GGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGT > 1:2728327/1‑100 GGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGT > 1:1345714/1‑100 GGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGT > 2:182700/1‑100 GTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTC > 2:2433008/1‑100 GTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTC > 1:1122140/1‑100 TTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCA < 2:2452251/100‑1 aACTTTGGCGGGAAGGGAAACAGAATTTGGCTGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGACAT > 2:174811/2‑100 TACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCAT < 1:719705/100‑1 TTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCT > 1:2075703/1‑100 TAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACC > 1:1883230/1‑100 ATACAGGGGATGAAGGGATGACCAGAGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTT > 2:1804935/1‑100 TGAAGGGATGACCAGAGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGC > 2:2312879/1‑100 GAAGGGATGACCAGAGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCC > 2:683578/1‑100 AAGGGATGACCAGAGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCA > 2:1640588/1‑100 AGGGATGACCAGAGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAA > 1:1894296/1‑100 GTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTT < 2:1068082/100‑1 TCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTC > 1:544960/1‑100 TCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTC > 2:263424/1‑100 CATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCA > 2:462682/1‑100 ATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCAT < 1:881750/100‑1 ATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCAT > 2:2251516/1‑100 TCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATC > 2:939625/1‑100 TCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATC < 2:721537/100‑1 TCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATC < 2:1440186/100‑1 CCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCT < 2:1679533/100‑1 CCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCT < 1:757816/100‑1 CCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCT < 1:754023/100‑1 CCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCT > 2:526423/1‑100 CCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTA > 1:1292489/1‑100 CTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTAC < 2:2162681/100‑1 CTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTAC < 1:1640601/100‑1 TTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACT < 1:2348735/100‑1 TTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACT < 1:1804949/100‑1 TTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACT < 1:145155/100‑1 GGGTTACTTTGGCTGGAAGGGAAACAGAATCTGGATGGATGGGTCTGGCAGGGTAACAGTATTGTTATTACCTATACAGGGGATGAAGGGATGACCAGAGTCATCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2884675‑2884568‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcatccctTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACT > NC_000913/2884590‑2884688 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |