New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258602NA (NA)28 (0.290) 12/168 NT NA noncoding (74/768 nt) IS1 repeat region
?NC_000913 = 279836 NA (NA)noncoding (95/768 nt) IS1 repeat region

AGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258499‑258602
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACC  <  NC_000913/279836‑279738
                                                                                                                                                                                                           
AGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGAC                                                                                                         >  1:1272913/1‑100
 GTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACA                                                                                                        >  2:1678658/1‑100
 GTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACA                                                                                                        >  2:2445481/1‑100
   TGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGC                                                                                                      <  1:497612/100‑1
   TGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGC                                                                                                      <  2:1887814/100‑1
   TGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGC                                                                                                      <  1:2273233/100‑1
   TGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGC                                                                                                      <  2:1941750/100‑1
    GCCCTGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT                                                                                                     <  1:1880699/100‑1
    GCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGTCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT                                                                                                     >  1:88704/1‑100
    GCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT                                                                                                     <  1:935198/100‑1
    GCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT                                                                                                     >  2:1173940/1‑100
    GCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT                                                                                                     <  1:230585/100‑1
     CCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCGGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACA                                                                                                        >  1:1712850/1‑96
       ATGTTGTAGGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTGACGCACCACCCCGTCAGTGGCTGAACAGGAGGGACAGCggat                                                                                                  <  1:2890526/100‑5
                                                            CCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTG                                             >  2:1912988/1‑100
                                                                    CACCACCCCGTCAGTAGCTGAACAGGCGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACT                                     >  2:1772997/1‑100
                                                                      CCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGC                                   >  1:1715246/1‑100
                                                                       CACCCCGTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCC                                  >  2:1354339/1‑100
                                                                        ACCCCGTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCG                                 >  2:2656958/1‑100
                                                                         CCCCGTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACAGCAGCGCTATCCCTGCTCTCACTGC                                   >  1:210808/1‑97
                                                                          CCCGTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTA                               >  1:2863951/1‑100
                                                                          CCCGTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTA                               >  1:48574/1‑100
                                                                           CCGTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAA                              >  2:1247942/1‑100
                                                                            CGTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAA                             >  2:1205481/1‑100
                                                                            CGTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAA                             >  1:1453093/1‑100
                                                                            CGTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATAAGCGCTATCTCTTCTCTCACTGCCGTAAA                             >  2:925885/1‑100
                                                                             GTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAA                            >  2:2833882/1‑100
                                                                             GTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAA                            >  1:635706/1‑100
                                                                             GTCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCCCTATCTCTGCTCTCACTGCCGTAAAA                            >  2:1294146/1‑100
                                                                              TCAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAAC                           >  2:1178241/1‑100
                                                                               CAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTCACGGCGAAAGCACCGCCGGACATCAGCGCCATCTCTGCTCTCCCTGCCGTcaga                            >  1:2548769/1‑94
                                                                               CAGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACACCAGCGCTATCTCTGCTCTCACTGCCGTAAAAC                           >  1:69140/1‑99
                                                                                AGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATGTCTGCTCTCCCGGCCGTAAA                             >  1:2450487/1‑96
                                                                                AGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACAT                         >  2:42396/1‑100
                                                                                AGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACAT                         >  1:624410/1‑100
                                                                                AGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACAT                         >  2:1282813/1‑100
                                                                                AGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACAT                         >  2:2787115/1‑100
                                                                                AGTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACAT                         >  1:1043110/1‑100
                                                                                 GTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG                        >  2:1639240/1‑100
                                                                                 GTAGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG                        >  2:2377727/1‑100
                                                                                 GTAGCTGAACAGGAGGGACAGCTACTGACGGGCTGGTGCGTAACGGCAAAAGCACCGCAGGACATAAGCGCTATCTCTGCTCTCACTGCCGTAAAACATG                        >  2:2770864/1‑100
                                                                                   AGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGC                      >  2:323984/1‑100
                                                                                                   CAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAACCATGACAACTGCAGTTCACTTA      >  2:536890/1‑100
                                                                                                   CAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTA      >  2:2168917/1‑100
                                                                                                   CAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTA      >  2:1497269/1‑100
                                                                                                    AGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTAC     >  1:2832064/1‑100
                                                                                                     GCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGTACATCAGCGCTATCTCGGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTAC     <  1:275641/99‑1
                                                                                                     GCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAATCATGGCAACTGCAGTTCACTTACA    >  1:1002860/1‑100
                                                                                                     GCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACA    >  2:839021/1‑100
                                                                                                     GCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACA    >  2:841401/1‑100
                                                                                                     GCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACA    >  2:2640106/1‑100
                                                                                                     GCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACA    >  2:2774367/1‑100
                                                                                                     GCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACA    <  2:1695518/100‑1
                                                                                                     GCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACA    >  2:2829398/1‑100
                                                                                                     GCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACA    <  2:1184227/100‑1
                                                                                                     GCTACTGACGGGGTGGTGCGTAACGGAAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACA    >  2:1780361/1‑100
                                                                                                      CTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACAC   <  1:913324/100‑1
                                                                                                       TACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACC  >  1:2416335/1‑100
                                                                                                       TACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACC  <  2:2154332/100‑1
                                                                                                       TACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACC  >  1:2457347/1‑100
                                                                                                       TACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACC  <  1:532237/100‑1
                                                                                                                                                                                                           
AGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258499‑258602
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACC  <  NC_000913/279836‑279738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.