| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 294856 = | 102 (0.980) | 16 (0.170) | 9/160 | NT | 16.1% | intergenic (‑57/+283) | yagM/yagN | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| ? | NC_000913 | 294883 = | 75 (0.800) | intergenic (‑84/+256) | yagM/yagN | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein | |||||
TGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAATGGGGCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/294963‑294856‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcaacaTCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTAA > NC_000913/294883‑294981 TGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAATG < 2:2179562/100‑1 GTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAATGG > 2:1037001/1‑100 CCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAATGtg > 1:607132/1‑97 CCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAATGGGG > 2:2862324/1‑100 CCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCACGAGAAAAATAGGG > 1:776940/1‑100 CTCGATTTTATAGATACATTTTCTGTACGTGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAATGGGGC < 2:1892896/100‑1 CTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAATGGGGC > 2:1854236/1‑100 TAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGT > 2:2746816/1‑100 GATTTATAGCGATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAACATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATG > 1:492039/1‑100 TAGCGATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATTACATCTGTAATTTATTACATAATTTCTCGTACAGAAAATGTATCTA > 1:1904074/1‑100 GCGATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATA > 1:1568887/1‑100 CGATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAA > 2:1071506/1‑100 CGATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAA > 2:803639/1‑100 CGATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAA > 2:2324309/1‑100 GATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAA > 1:1147054/1‑100 GATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAA > 2:1306082/1‑100 ATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAA > 1:938076/1‑100 ATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAA > 1:937577/1‑100 ATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAA > 2:108232/1‑100 ATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAA > 2:2328176/1‑100 ATGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATCAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAA > 2:2796608/1‑100 TGTTGCCCCGAGAAAAATGGGGCAACATCGCTATAAATCAATAAAATCAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAGTGTCTCTATAAAA > 1:2352846/1‑99 TGCCCCGAGAAAAATGGGGCAACACCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGA > 2:1954806/1‑100 GGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTA > 2:1285860/1‑100 GCAAGATCGCTATAAATCAAGAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACC < 1:2649422/100‑1 ACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGT < 1:2842172/100‑1 CATCGCTATACATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTn < 2:462469/100‑2 CATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTA < 2:933779/100‑1 ATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTAA > 2:1541757/1‑100 ATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTAGTACAGAAAATGTATCTATAAAATCGAGGACATCTGTTCGTAACCAGTAA > 1:2174428/1‑100 TGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAATGGGGCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/294963‑294856‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcaacaTCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTAA > NC_000913/294883‑294981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |