| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1322981 | 76 (0.730) | 13 (0.140) | 12/164 | NT | 15.1% | intergenic (‑35/+57) | trpE/trpL | component I of anthranilate synthase/trp operon leader peptide |
| ? | NC_000913 | = 1322988 | 76 (0.790) | intergenic (‑42/+50) | trpE/trpL | component I of anthranilate synthase/trp operon leader peptide | |||||
GCGCGGTGGGATTGTCGCGATAAGCGCCTTCGCAGGTTAGCAGTTCGAGAGTCGGTTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTCAAAAAAAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1322877‑1322981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccgcCTAATGA‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCGAAGGCGCTTATCGCGAC < NC_000913/1322988‑1322890 GCGCGGTGGGATTGTCGCGATAAGCGCCTTCGCAGGTTAGCAGTTCGAGAGTCGGTTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTCAAAAAAAAG < 2:1437812/100‑1 GCGGTGGGATTGTCGCGATAAGCGCCTTCGCAGGTTAGCAGTTCGAGAGTCGGTTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTCAAAAAAAAGCC < 2:2170699/100‑1 GCGGTGGGATTGTCGCGATAAGCGCCTTCGCAGGTTAGCAGTTCGAGAGTCGGTTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTCAAAAAAAAGCC > 1:466259/1‑100 gcTGGTATTGTCGCGATAATCGCCTTCGCATTTTATCAGTTCGAGAGTCGATTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTCAAAAAAAAGCCC < 1:344864/97‑1 GTGGGATTGTCGCGATATGCGCGTTCGCAGGTTAGCAGTTCGAGAGTCGGTTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTCAAAAAAAAGCCCGC < 1:2738668/100‑1 GTGGGATTGTCGCGATAAGCGCCTTCGCAGGTTAGCAGTTCGAGAGTCGGTTTTTGTGTTTGCTTTGTTATTCTCTAATTTTGTTCAAAAAAAAGCCCGC > 1:1940585/1‑100 CGATAAGCGCCTTCGCAGGTTAGCAGTTCGAGAGTCGGTTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTCAAAAAAAAGCCCGCCTAATGA‑GCGGG < 2:1271113/100‑1 ATAAGCGCCTTCGCAGGTTAGCAGTTCGAGAGTCGGTTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTCAAAAAAAAGCCCGCCTAATGA‑GCGGGCT < 2:2147781/100‑1 AAGCGCCTTCGCAGGTTAGCAGTTCGAGAGTCGGTTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTCAAAAAAAAGCCCGCCTAATGA‑GCGGGCTTT < 1:6295/100‑1 AGCGCCTTCGCAGGTTAGCAGTTCGAGAGTCGGTTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTCAAAAAAAAGCCCGCCTAATGA‑GCGGGCTTTT < 2:1406315/100‑1 GCAGGTTAGCAGTTCGAGATTTGGTTTTTGTGTTTGCAGTGTTATTCTCTAATTTTGTTCAAAAAAAAGCCCGCCTAATGA‑GCGGGCTTTTTTTTGAAC < 1:1248419/99‑1 GGTTAGCAGTTCGAGAGTCGGTTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTCAAAAAAAAGCCCGCTCATTAG‑GCGGGCTTTTTTTTGAACAAAA > 2:2254133/1‑100 GAGTCGGTTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTAAAAAAAAAACCCGCCTAATGA‑TCGGGC‑TTTTTTTGAACAAAATTAGAGAATAACAAT < 1:1763998/100‑1 TGTTATTCTCTAATTTTGTTCAAAAAAAAGCCCGCTCATTAG‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCT > 2:1985181/1‑100 CAAAAAAAAGCCCG‑CTCATTAGGCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCGAAG > 1:1118284/1‑100 atAAAAAAGCCCGCTCATTAG‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCGAAGG > 2:1970822/3‑100 AAAAAAAAGCCCGCTCATTAG‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCATACACAAAAACCGACTCTCGAACTGCTAACCTGCGAAGG > 1:540836/1‑100 AAAAAAAAGCCCGCTCATTAG‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCTAAGG > 2:769315/1‑100 AAAAAAAAGCCCG‑CTCATTAGGCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCGAggg > 2:847825/1‑97 AAAAAAAGCCCG‑CTCATTAGGCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCGAAGGC > 2:1763958/1‑100 AAAAAAGCCCGCTCATTAG‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTCCGAAGGC > 1:2100317/1‑99 CCCGCCTAATGA‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCGAAGGCGCTTATCG < 2:2860803/100‑1 CCGCCTAATGA‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCGAAGGCGCTTATCGC < 2:1064677/100‑1 CGCCTAATGA‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCGAAGGCGCTTATCGC < 2:1895193/99‑1 GCCTAATGA‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCGAAGGCGCTTATCGCGA > 1:212490/1‑100 CCTAATGA‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCGAAGGCGCTTATCGCGAC < 2:2039900/100‑1 CCTAATGA‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCGAAGGCGCTTATCGCGAC < 2:2302538/100‑1 GCGCGGTGGGATTGTCGCGATAAGCGCCTTCGCAGGTTAGCAGTTCGAGAGTCGGTTTTTGTGTTTGCATTGTTATTCTCTAATTTTGTTCAAAAAAAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1322877‑1322981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccgcCTAATGA‑GCGGGCTTTTTTTTGAACAAAATTAGAGAATAACAATGCAAACACAAAAACCGACTCTCGAACTGCTAACCTGCGAAGGCGCTTATCGCGAC < NC_000913/1322988‑1322890 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |