| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1691370 = | 81 (0.780) | 14 (0.160) | 8/154 | NT | 16.7% | intergenic (+10/+216) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein |
| ? | NC_000913 | 1691402 = | NA (NA) | intergenic (+42/+184) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein | |||||
CATAAATTCAAAGTGTTGCAGGAAAAGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1691480‑1691370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATA > NC_000913/1691402‑1691499 CATAAATTCAAAGTGTTGCAGGAAAAGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAACATTC > 2:303462/1‑100CATAAATTCAAAGTGTTGCAGGAAAAGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTC > 2:2060968/1‑100 AATTCAAAGTGTTGCAGGAAAAGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCG > 2:908216/1‑100 ATTCAAAGTGTTGCAGGAAAAGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGG > 2:2896548/1‑100 ATTCAAAGTGGTGCAGGAAAAGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGG < 1:900062/100‑1 CAAAGTGTTGCAGGAAAAGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGT > 1:137273/1‑100 CAAAGTGTTGCAGGAAAAGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGT < 1:1629834/100‑1 CAAAGTGTTGCAGGAAAAGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCG > 1:447864/1‑99 AAGTGTTGCAGGAAAAGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT > 2:1575671/1‑100 AAGTGTTGCAGGAAAAGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTT < 2:1924751/100‑1 TTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTC > 1:2352635/1‑100 CAGATTAAGACGCCGGAGTGAAAATTCTCCGGCTTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTccttg > 1:1154831/1‑94 CAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTT > 1:1171955/1‑95 GATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAA > 2:1872184/1‑100 GATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACAAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTG > 1:1081719/1‑97 TGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACA > 1:1691403/1‑100 AAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTT > 1:2131345/1‑100 AAACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTT > 1:1461162/1‑100 AACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTT > 2:15494/1‑100 AACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTT > 2:172577/1‑100 ACGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTG > 1:2517225/1‑100 CGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTCTCAGGCCTACCTTTTCCTGCCACACTTTGA > 2:2123686/1‑100 CGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGA > 2:798395/1‑100 CGCCGGAGTGAAAATTCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTG > 2:1481676/1‑99 CTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTG < 1:2543690/99‑1 CCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAG > 1:758256/1‑100 CGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGG > 2:1411103/1‑100 nGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGC > 1:594807/2‑100 GGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTCTCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGC > 2:2075276/1‑100 GCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCT < 2:1274339/100‑1 CGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTG < 2:931687/100‑1 TTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGACTGGATA < 2:1533124/100‑1 CATAAATTCAAAGTGTTGCAGGAAAAGGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTCTGGTTTGTTTTCAGATGAAAACGCCGGAGTGAAAATTCTCCGGCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1691480‑1691370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATA > NC_000913/1691402‑1691499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |