New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1816343NA (NA)15 (0.150) 9/172 NT NA noncoding (159/189 nt) RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 = 1816373 NA (NA)noncoding (189/189 nt) RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

AGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCgcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1816245‑1816343
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCAGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGC  <  NC_000913/1816373‑1816274
                                                                                                                                                                                                       
AGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCG                                                                                                     <  2:1878422/100‑1
 GGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGC                                                                                                    <  2:1272878/100‑1
                     AGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTG                                                                                <  2:506968/100‑1
                             GCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTTTAGGAATTACTCGCCAGATGCGGCGTGAACCTTGCATCCGGC                                                                        <  1:2907567/100‑1
                             GCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCGGCGTGAACCTTGCATCCGGC                                                                        <  2:1085429/100‑1
                             GCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGC                                                                        <  2:585588/100‑1
                             GCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGC                                                                        <  1:974827/100‑1
                             GCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGC                                                                        <  2:1340034/100‑1
                             GCATCAGGCAGTTTTGCGTTTGCCAGCAGTCGCAAGCGGCGCAGTTACGCTGCCTTTTTAGAAATTAATCGCCAGATGCGGCGTGAACCTTGCATGCGGC                                                                        <  1:1934683/100‑1
                              CATCAGGCAGTTTTGCGTTTGTCAGCAGGCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCGGCGTGAACCTTGCATCCGGCG                                                                       <  2:81713/100‑1
                               ATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGCGA                                                                      <  2:936897/100‑1
                               ATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGCGA                                                                      <  1:1862010/100‑1
                                TCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGCGAT                                                                     <  2:1986898/100‑1
                                 CAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGCGATT                                                                    <  2:1313206/100‑1
                                    GCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATTGCCAGATGCGGCGTGAACCTTGCATCCGGCGATTAAT                                                                 <  1:1950848/100‑1
                                      AGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGCGATTAATTC                                                               <  1:117314/100‑1
                                          TTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTAC                                                           <  1:2202008/100‑1
                                                                                                   GCCAGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGC  <  1:2075552/100‑1
                                                                                                                                                                                                       
AGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCgcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1816245‑1816343
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCAGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGC  <  NC_000913/1816373‑1816274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.