New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729452	NA (NA)	17 (0.180)	7/158	NT	NA	intergenic (‑8/+164)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
	?	NC_000913	= 2729474	NA (NA)					intergenic (‑30/+142)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon

CGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2729344‑2729452 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacgaaaa‑‑‑‑‑tATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGG  <  NC_000913/2729474‑2729376                                                                                                                                                                                                                       CGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGA                                                                                                                   <  1:1571436/100‑1  GACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGAC                                                                                                                  <  2:1726989/100‑1  GACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGAC                                                                                                                  >  1:2877652/1‑100  GACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGAC                                                                                                                  <  2:36122/100‑1  GACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGAC                                                                                                                  <  2:2781519/100‑1    CTTTCACTCACAAACCAGCAAGTGGCGTCCCCTCGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACAC                                                                                                                <  2:1826614/100‑1    CTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACAC                                                                                                                <  2:1826522/100‑1    CTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACAC                                                                                                                <  2:2025625/100‑1    CTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACAC                                                                                                                >  2:2465463/1‑100    CTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGACGAGAAAGGTCGGTGTCCTGGGCCTCTAGACGAAGGGGACAC                                                                                                                >  1:2047122/1‑100     TTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGTGGATTCGAACCCCTGTTACCGCCGTGAAAGGCCGGTGTCCTGGGCCTCTAGACGAAGGGGGCACG                                                                                                               >  1:2411123/1‑100      TTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGA                                                                                                              <  2:1843006/100‑1        CACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAA                                                                                                            >  2:2640309/1‑100        CACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAA                                                                                                            >  2:1880639/1‑100        CACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAA                                                                                                            >  2:1537098/1‑100        CACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAA                                                                                                            >  1:2035035/1‑100         ACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA                                                                                                           >  2:2597162/1‑100         ACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA                                                                                                           >  2:1899210/1‑100         ACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA                                                                                                           <  1:1741936/100‑1          CTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑T                                                                                                     >  2:2184085/1‑100          CTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑T                                                                                                     >  2:2074303/1‑100          CTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑T                                                                                                     >  2:11759/1‑100          CTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑T                                                                                                     >  2:1143752/1‑100                                 CCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAA                                                                              >  1:716486/1‑100                                       GGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCG                                                                        <  2:1732071/100‑1                                        GGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCG                                                                        <  1:2245437/99‑1                                         GATTCGACCCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTG                                                                      <  2:1535620/100‑1                                         GATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTG                                                                      <  1:2743002/100‑1                                         GATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTG                                                                      <  2:1684155/100‑1                                         GATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTG                                                                      <  2:1945927/100‑1                                         GATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTG                                                                      <  2:39049/100‑1                                         GATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTG                                                                      <  2:716489/100‑1                                          ATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGT                                                                     <  1:2355632/100‑1                                          ATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGT                                                                     <  2:400626/100‑1                                          ATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGT                                                                     <  2:42799/100‑1                                           TTCGAACCCCTGTTCCCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTC                                                                    <  1:1892868/100‑1                                            TCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCC                                                                   <  2:2044538/100‑1                                                ACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTT                                                               <  2:1127542/100‑1                                                ACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTT                                                               <  2:1125726/100‑1                                                 CCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGATAAGCAATTTTCGTG                                                                      <  1:2055070/97‑1                                                                                                    ACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTGACAGGGGTTCGAAT           >  1:2032431/1‑100                                                                                                    ACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAAT           >  1:2597147/1‑100                                                                                                    ACACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAAT           <  2:1611649/100‑1                                                                                                     nACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATC          >  1:2107605/2‑100                                                                                                     CACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATC          <  2:1323538/100‑1                                                                                                     CACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATC          >  1:1336339/1‑100                                                                                                     CACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATC          >  1:1805544/1‑100                                                                                                     CACGAAAA‑‑‑‑‑TATCACGCAACGCGAGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCACTCTCACGGCGGTAACAGGGGTTCAAAT           >  1:991030/1‑99                                                                                                      ACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGCGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCC         <  1:1620253/100‑1                                                                                                      ACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCC         >  2:2609143/1‑100                                                                                                      ACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCC         <  1:1606589/100‑1                                                                                                      ACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCC         <  1:2117415/100‑1                                                                                                      ACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCC         <  2:2637739/100‑1                                                                                                      ACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCC         >  2:1570087/1‑100                                                                                                      ACGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTGCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCC         <  2:2686676/100‑1                                                                                                       CGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCC        <  1:2264360/100‑1                                                                                                       CGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCC        <  2:2012329/100‑1                                                                                                       CGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCC        >  2:1246569/1‑100                                                                                                       CGAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCC        >  2:369212/1‑100                                                                                                        GAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCC       <  2:1726721/100‑1                                                                                                        GAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCC       <  2:2846695/100‑1                                                                                                        GAAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCC       <  2:1293301/100‑1                                                                                                         AAAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCT      >  1:217713/1‑100                                                                                                          AAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTA     <  2:1140956/100‑1                                                                                                          AAA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCT      <  1:132692/99‑1                                                                                                           AA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAG    >  2:1224273/1‑100                                                                                                           AA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAG    <  1:870699/100‑1                                                                                                           AA‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTATAGAGGCCCAGGACACCGCCCTATCAAGGCGGTAACAGGGGTTCGCAACCCCTAG    >  2:2656009/1‑100                                                                                                            A‑‑‑‑‑TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGG   <  2:2378127/100‑1                                                                                                                  TATCACGCGTTGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGACCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAG    >  1:2722485/1‑98                                                                                                                  TATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGG  <  1:1643006/100‑1                                                                                                                                                                                                                       CGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAA‑‑‑‑‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2729344‑2729452 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacgaaaa‑‑‑‑‑tATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGG  <  NC_000913/2729474‑2729376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.