New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 4551007 | 87 (0.840) | 8 (0.080) | 7/162 | NT | 8.4% | coding (290/1344 nt) | gntP | fructuronate transporter |
? | NC_000913 | = 4551030 | 96 (1.020) | coding (267/1344 nt) | gntP | fructuronate transporter | |||||
Rejected: Frequency below cutoff threshold. |
GGCAATAACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4550901‑4551007 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atagcgcaTACGCTGCTGGCGCGTCTCGGTCTGCGCTATGTACAGCTGTCGGTGATTATCATCGGCCTGATTTTTGGTCTGGCGATGTTCTATGAAGTGGCCTTTAT < NC_000913/4551030‑4550932 GGCAATAACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACA > 2:1110109/1‑100 GCAATAACAATAACCATCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACAT < 2:568834/100‑1 GCAATAACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACAT > 2:2336218/1‑100 GCAATAACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACAT < 1:2717919/100‑1 CAATAACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATA < 2:2275156/100‑1 CAATAACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATA > 2:479228/1‑100 CAATAACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATA > 2:485838/1‑100 AATAACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAG < 2:629562/100‑1 ATAACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGC < 2:1253288/100‑1 TAACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCG < 1:1034794/100‑1 TAACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCG < 2:2621100/100‑1 AACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGC < 1:2718652/100‑1 AACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGC > 2:590471/1‑100 ACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGCA < 2:476724/100‑1 ACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGCA < 2:1905274/100‑1 ACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGCA > 2:2354555/1‑100 AGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGCATACGCTGCTGGCGCGTCTCGGTCTGCGC < 2:2592666/100‑1 GCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGCATACGCTGCTGGCGCGTCTCGGTCTGCGCTA < 1:2128773/100‑1 CACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGCATACGCTGCTGGCGCGTCTCGGTCTGCGCTATG < 1:2694580/100‑1 ACTTCATAGAACATAAAAAAACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGCATACGCTGCTGGCGCGTCTCGGTCTGCGCTATG < 1:2694620/99‑1 CTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGCATACGCTGCTGGCGCGTCTCGGTCTGCGCTATGTA < 1:807147/100‑1 CATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGCATACGCTGCTGGCGCGTCTCGGTCTGCGCTATGTACAG < 1:1065580/100‑1 ATAGACCATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGCATACGCTGCTGGCGCGTCTCGGTCTGCGCTATGTACAGC < 2:430731/100‑1 aggACAACGACAGAGCAAAAATCAGGCCGATGATAATAACCGACAGCCGTACCTAGCGCATACGCTGCTGGCGCGTCTCGGTCTGCGCTATGTACAGCT < 1:1745686/96‑1 ATAGCGCATACGCTGCTGGCGCGTCTCGGTCTGCGCTATGTACAGCTGTCGGTGATTATCATCGGCCTGATTTTTGGTCTGGCGATGTTCTATGAAGTGG > 1:2336203/1‑100 TAGCGCATACGCTGCTGACGCGTCTCGGTCTGCGCTATGTACAGCTGTCGGTGATTATCATCGGCCTGATTTTTGGTCTGGCGATGTTCTATGAAGTGGC > 1:787355/1‑100 AGCGCATACGCTGCTGGCGCGTCTCGGTCTGCGCTATGTACAGCTGTCGGTGATTATCATCGGCCTGATTTTTGGTCTGGCGATGTTCTATGAAGTGGCC > 2:2198812/1‑100 GCGCATACGCTGCTGGCGCGTCTCGGTCTGCGCTATGTACAGCTGTCGGTGATTATCATCGGCCTGATTTTTGGTCTGGCGATGTTCTATGAAGTGGCCT < 1:2862028/100‑1 GCGCATACGCTGCTGGCGCGTCTCGGTCTGCGCTATGTACAGCTGTCGGTGATTATCATCGGCCTGATTTTTGGTCTGGCGATGTTCTATGAAGTGGCCT > 2:640713/1‑100 CGCATACGCTGCTGGCGCGTCTCGGTCTGCGCTATGTACAGCTGTCGGTGATTATCATCGGCCTGATTTTTGGTCTGGCGATGTTCTATGAAGTGGCCTT < 2:208062/100‑1 ATACGCTGCTGGGGCGTCTCGGTCTGCGCTATGTACAGCTGTCGGTGATTATCATCGGCCTGATTTTTGGTCTGGCGATGTTCTATGAAGTGGCCTTTA < 1:597757/99‑1 ATACGCTGCTGGCGCGTCTCGGTCTGCGCTATGTACAGCTGTCGGTGATTATCATCGGCCTGATTTTTGGTCTGGCGATGTTCTATGAAGTGGCCTTTAT < 1:808525/100‑1 GGCAATAACAATAACCAGCGGCGCTAACATGATAAAGGCCACTTCATAGAACATCGCCAGACCAAAAATCAGGCCGATGATAATCACCGACAGCTGTACATAGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4550901‑4551007 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atagcgcaTACGCTGCTGGCGCGTCTCGGTCTGCGCTATGTACAGCTGTCGGTGATTATCATCGGCCTGATTTTTGGTCTGGCGATGTTCTATGAAGTGGCCTTTAT < NC_000913/4551030‑4550932 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |