New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2888334 =NA (NA)14 (0.150) 8/164 NT NA noncoding (1/37 nt) REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2888367 = NA (NA)noncoding (34/37 nt) REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 143 total aligned reads displayed.

GGCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGC  >  NC_000913/2888235‑2888433
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tgcaggcttcggcgactttacggggcgtgcgggcatcattcgcccggtgctcgatccggcgcttgatttgtgggattaaccatcagcccggtcttgtagg                                                                                                     >  1:1552613‑M1/100‑100 (MQ=255)
ggCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttg                                                                                                     <  1:2814091/100‑1 (MQ=255)
ggCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttg                                                                                                     <  2:2814163/100‑1 (MQ=255)
 gaaggcttcggcgactttacggtgcgtgcgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGc                                                                                                    <  2:2316853‑M1/2‑1 (MQ=255)
 gaaggcttcggcgactttacggtgcgtgcgggcatcattcgcccggtgctcgatcccgcgcgtgatttgtgggattaaccatcagcccggtcttgtagGc                                                                                                    <  2:1907454‑M1/2‑1 (MQ=255)
 gCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgc                                                                                                    <  2:521208/100‑1 (MQ=255)
 gCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgc                                                                                                    <  2:375353/100‑1 (MQ=255)
 gCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgc                                                                                                    <  2:33650/100‑1 (MQ=255)
 gCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGGTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgc                                                                                                    <  1:379709/100‑1 (MQ=255)
  cGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTttgccttgcc                                                                                                   <  2:2738414/100‑1 (MQ=255)
  aaggcttcggcgactttacggtgcgtgcgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGcc                                                                                                   >  1:2543480‑M1/98‑100 (MQ=255)
   gTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTtgccttgcct                                                                                                  >  2:235950/1‑100 (MQ=255)
   aggcttcggcgactttacggtgcgtgcgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCt                                                                                                  >  2:1487716‑M1/97‑100 (MQ=255)
    ggcttcggcgactttacggtgcgtgcgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTg                                                                                                 <  1:2078126‑M1/5‑1 (MQ=255)
      cttcggcgactttacggtgcgtgcgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGAt                                                                                               <  2:1695337‑M1/7‑1 (MQ=255)
      aGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGAt                                                                                               <  1:2846092/100‑1 (MQ=255)
      aGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGAt                                                                                               <  2:2020171/100‑1 (MQ=255)
       gTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATg                                                                                              <  1:2080619/100‑1 (MQ=255)
        tttCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGc                                                                                             <  2:1782829/100‑1 (MQ=255)
        tttCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGc                                                                                             >  1:625265/1‑100 (MQ=255)
        tttCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGc                                                                                             <  2:1896078/100‑1 (MQ=255)
        tttCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGc                                                                                             <  2:1447513/100‑1 (MQ=255)
             gccagcgccagAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGc                                                                                        >  2:100666/1‑100 (MQ=255)
             gccagcgccagAAGGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTGTGCCTTGCCTGATGCGACg                                                                                         >  1:969288/1‑99 (MQ=255)
              ccagcgccagAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCt                                                                                       >  2:138408/1‑100 (MQ=255)
               ctttacggtgcgtgcgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTc                                                                                      <  2:2287790‑M1/16‑1 (MQ=255)
                 gcgccagAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCAc                                                                                    >  1:1194147/1‑100 (MQ=255)
                  cgccagAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCAcg                                                                                   <  2:2028858/100‑1 (MQ=255)
                     cagAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGt                                                                                <  2:698451/100‑1 (MQ=255)
                      agAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGtt                                                                               >  1:18762/1‑100 (MQ=255)
                        aaTGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCt                                                                             <  2:2206695/100‑1 (MQ=255)
                        aaTGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTACCTTGCCTGATGCGACGCTCACGCGTTCt                                                                             >  2:2478698/1‑100 (MQ=255)
                         aTGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCtt                                                                            >  2:2351448/1‑100 (MQ=255)
                            cGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATc                                                                         <  2:625268/100‑1 (MQ=255)
                             cgggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCa                                                                        >  2:2148111‑M1/71‑100 (MQ=255)
                               tCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAgg                                                                      >  2:163338/1‑100 (MQ=255)
                               tCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAgg                                                                      <  1:657930/100‑1 (MQ=255)
                               ggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAgg                                                                      >  2:1689487‑M1/69‑100 (MQ=255)
                               ggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAgg                                                                      >  2:2290379‑M1/69‑100 (MQ=255)
                               ggcatcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAgg                                                                      >  1:2287775‑M1/69‑100 (MQ=255)
                                cTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGc                                                                     >  2:157864/1‑100 (MQ=255)
                                cTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGc                                                                     <  2:468780/100‑1 (MQ=255)
                                 tACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGcc                                                                    <  2:1869707/100‑1 (MQ=255)
                                 catcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGcc                                                                    >  2:1739503‑M1/67‑100 (MQ=255)
                                  atcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCt                                                                   >  2:846625‑M1/66‑100 (MQ=255)
                                  aCCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCt                                                                   >  2:636197/1‑100 (MQ=255)
                                   tcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTa                                                                  >  2:1144666‑M1/65‑100 (MQ=255)
                                    cgaaggtagatcgttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTAc                                                                 <  2:2477285/90‑1 (MQ=255)
                                    cattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTAc                                                                 >  1:404632‑M1/64‑100 (MQ=255)
                                      tCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACaa                                                               >  1:450981/1‑100 (MQ=255)
                                       cGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAg                                                              <  2:1313/100‑1 (MQ=255)
                                         gCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCATGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGAc                                                            >  1:2213221/1‑100 (MQ=255)
                                          cAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGAcc                                                           >  2:1200298/1‑100 (MQ=255)
                                            gttcgttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCgg                                                         >  2:2876239/1‑100 (MQ=255)
                                              tcgttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGc                                                       <  2:1145054/100‑1 (MQ=255)
                                              tcgttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGc                                                       <  1:793934/100‑1 (MQ=255)
                                               cgttcAGGGCGTTTAGATCGAGTTTGCACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCt                                                      >  2:1770719/1‑100 (MQ=255)
                                                gttcAGGGCGTTTCGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCt                                                      >  1:80433/1‑99 (MQ=255)
                                                  tcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGAt                                                   >  2:2438024/1‑100 (MQ=255)
                                                  tcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGAt                                                   <  2:2631812/100‑1 (MQ=255)
                                                   cAGGGCGTTTAGATCGAGTTTGGACATATATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATg                                                  <  1:2086490/100‑1 (MQ=255)
                                                    aGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATgg                                                 >  2:772044/1‑100 (MQ=255)
                                                     gggCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGt                                                >  1:175179/1‑100 (MQ=255)
                                                      gtcGTTTAGATCGAGTTTGGACATCGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGtt                                               <  1:1874021/98‑1 (MQ=255)
                                                       gCGTTTAGATCGAGTTTGGATATAGATTCCTCACTGTTTGCCTTACCTTATGCGACGCTCACAAGGTCTTATCAGGCCTACAAGAGCGGGCTgcagg                                                 >  1:2734383/1‑93 (MQ=255)
                                                       gCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTa                                              >  2:2246160/1‑100 (MQ=255)
                                                         gcttAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTTACACGTTCTCATCAGGCCTACACGACCGGGCTGATGGttga                                             >  1:2046876/3‑97 (MQ=38)
                                                          tttAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAAt                                            >  1:2551413/1‑99 (MQ=255)
                                                             agagCGAGTTTGGAGATAGATTCCTCACTGTTTGCCCTGCCGGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATccc                                         <  1:350036/99‑1 (MQ=38)
                                                              gagcGAGTTTGTAAACAGATTCCTTACTGTTTGCCTTGCCTGAAGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcac                                       <  1:136792/97‑1 (MQ=37)
                                                              gATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcac                                       >  1:2918814/1‑100 (MQ=255)
                                                              gATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcac                                       <  2:1891156/100‑1 (MQ=255)
                                                               aTCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACTCGTTCTTATCAGGGCTACAAGACCGGGCTGATGGTTAATCCcaca                                      <  1:1316860/100‑1 (MQ=255)
                                                                tCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACaa                                     >  2:2572299/1‑100 (MQ=255)
                                                                      ttGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCAcg                               >  2:348378/1‑100 (MQ=255)
                                                                       tGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCAcgc                              >  1:1771536/1‑100 (MQ=255)
                                                                       tGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCAcgc                              >  2:469168/1‑100 (MQ=255)
                                                                           cATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCAcgc                              >  1:2213307/1‑96 (MQ=255)
                                                                            aTAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCg                          >  1:1800869/1‑99 (MQ=255)
                                                                             tAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGa                        >  1:57762/1‑100 (MQ=255)
                                                                              aGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGAt                       <  1:103400/100‑1 (MQ=255)
                                                                              aGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGAt                       >  2:2617497/1‑100 (MQ=255)
                                                                              aGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGAt                       >  1:546641/1‑100 (MQ=255)
                                                                                   ccTCACTGTTTGCCTTGCCTGATTCGACGCTCACGCGTTCTTATCAGGCGTACAAGACCGGGCTGATGGTGAATTCCACAAATCACGCGCCGGATCGAg                   >  1:230037/1‑99 (MQ=39)
                                                                                   ccTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCATGCGCCGGATCGAGc                  >  1:1985174/1‑100 (MQ=255)
                                                                                    cTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCa                 >  1:217509/1‑100 (MQ=255)
                                                                                    cTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCa                 >  2:2494226/1‑100 (MQ=255)
                                                                                    cTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCa                 >  2:777414/1‑100 (MQ=255)
                                                                                    cTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCa                 >  2:293289/1‑100 (MQ=255)
                                                                                       aCTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCg              >  2:1012628/1‑100 (MQ=255)
                                                                                        cTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTCTAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCagc               >  1:1083632/1‑96 (MQ=255)
                                                                                         tctttGCCTTGCCTGATGCTACGATCACGCGTTCTTATCAGGCCTACAGGACCGAGCTGAGGTTTAATCCCACAGATCGCGCCGCGGATCGAGCa                 >  1:2186242/3‑95 (MQ=25)
                                                                                          gTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGc           <  2:1985185/100‑1 (MQ=255)
                                                                                          gTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGc           <  2:1184710/100‑1 (MQ=255)
                                                                                           tttCCCTTGCCTGATGCGACGCTCACGCGTTCTTACCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAAGCACGCGCCGGATCGAGCACCGGGc           <  1:2442572/99‑1 (MQ=255)
                                                                                             tgccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGaa        >  1:651433/1‑100 (MQ=255)
                                                                                              gccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCTCACAAATCACGCGCCGGATCGAGCACCGGGCGGat       >  2:228424/1‑100 (MQ=255)
                                                                                              gccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAat       <  2:1193433/100‑1 (MQ=255)
                                                                                              gccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAat       <  1:1438229/100‑1 (MQ=255)
                                                                                                   GCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGc  <  1:2722418‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGC  >  NC_000913/2888235‑2888433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.