| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3423822 | 0 (0.000) | 48 (0.500) | 9/166 | NT | 100% | intergenic (‑35/+58) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4040506 = | NA (NA) | intergenic (+83/‑11) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
ACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG > NC_000913/3423723‑3423921 | aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT > 2:2153573‑M1/1‑100 (MQ=255)aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT < 2:1707433‑M1/100‑1 (MQ=255)aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT > 1:1920096‑M1/1‑100 (MQ=255)aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT > 2:2813010‑M1/1‑100 (MQ=255) cGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCACATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT > 2:2696810‑M1/1‑99 (MQ=255) gTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGGCAAATTCTGTTTTATCAGAACGCAGAAGCGGTCTGATaaaac < 1:1921080‑M1/100‑6 (MQ=255) tttCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGAACGCAGAAGCGGTCTGATaaaaca < 2:1134489‑M1/100‑7 (MQ=255) ggCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactca > 2:1268276‑M1/1‑39 (MQ=255) aaTTCTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaag > 1:253344‑M1/1‑35 (MQ=255) aaTTCTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaag > 2:1670008‑M1/1‑35 (MQ=255) tCTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtga > 2:1506862‑M1/1‑32 (MQ=255) tCTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtga > 1:1879280‑M1/1‑32 (MQ=255) tCTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtga > 2:2813294‑M1/1‑32 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 2:2543498‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 1:1926400‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 2:2554318‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccatagcgcggtggtcccacctgaccccatgtcgaactcagaagtgaa > 1:2134229‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 2:2590035‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 1:2633699‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtga > 1:1167019‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcacggtgttcccacctgaccccatgccgaactcagaagtgaa > 2:2000855‑M1/1‑31 (MQ=255) cTGTTTCATCAGACCGCTTCTGCGTTCTGATgaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 1:2392243‑M1/1‑31 (MQ=255) tGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcggggtggtcccacctgaccccatgccgaactcagaagtga > 2:259343‑M1/1‑30 (MQ=255) tGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaa > 1:1225418‑M1/1‑30 (MQ=255) tGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaa > 2:1057557‑M1/1‑30 (MQ=255) tGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaa > 2:1300998‑M1/1‑30 (MQ=255) tGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaa > 1:1119636‑M1/1‑30 (MQ=255) tGTTTCATCAGACCGCTTCTGCGATCTGATgaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaa > 1:98701‑M1/1‑30 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaaccgaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactaagaagtgaaac > 2:911385‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 2:2167739‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 1:2400920‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 1:2343497‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 2:308003‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 2:1124267‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 1:2615435‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 2:2501203‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 2:806745‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 2:1106445‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 2:1108451‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTCCGTTCTGATaaaacagcatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 1:2088367‑M1/1‑29 (MQ=255) gTTTCATCAGACCGCTTCTGCGTTCTGATgaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgacctcagaagtgaaac > 2:239900‑M1/1‑29 (MQ=255) gTTTCATCAGACCGCTTCTGCGTTCTGATgaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 1:58747‑M1/1‑29 (MQ=255) tttcATCAGACCGCTTCTGCGTTCTGATgaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 1:2387185‑M1/1‑28 (MQ=255) ttcatcaGACCGCTTCTGCGTTCTGATgaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgc > 1:113105‑M1/4‑27 (MQ=255) ttATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgcc > 2:1136740‑M1/1‑26 (MQ=255) ttATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgcc > 2:1103122‑M1/1‑26 (MQ=255) tATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccg > 1:2166630‑M1/1‑25 (MQ=255) aTCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgt > 2:2127321‑M1/1‑24 (MQ=255) aTCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcattagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgt > 2:860556‑M1/1‑24 (MQ=255) aTCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgt > 1:2555780‑M1/1‑24 (MQ=255) tCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgta > 2:1663018‑M1/1‑23 (MQ=255) gCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccga > 1:324171‑M1/1‑16 (MQ=255) cTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccga > 2:2371171‑M1/1‑15 (MQ=255) cTTCTGCGTTCTGATaaaacagaatttgcatggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgat > 2:1004619‑M1/1‑15 (MQ=255) tCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtg < 1:1467254‑M1/100‑95 (MQ=255) tCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtg < 2:1411136‑M1/100‑95 (MQ=255) cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgtactcagcagtgaaacgccgtagcgccgatggtagtgtgg > 1:2049551‑M1/1‑5 (MQ=255) cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg > 2:1918249‑M1/1‑5 (MQ=255) cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg > 1:1902322‑M1/1‑5 (MQ=255) cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg > 1:18603‑M1/1‑5 (MQ=255) cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg < 2:2906232‑M1/100‑96 (MQ=255) tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggg > 1:700611‑M1/1‑4 (MQ=255) tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggg > 2:52387‑M1/1‑4 (MQ=255) tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggg < 1:2519569‑M1/100‑97 (MQ=255) tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggg > 2:2070051‑M1/1‑4 (MQ=255) tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg > 2:1812597‑M1/1‑4 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:2808607‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:1237934‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 2:1383639‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:785919‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:675266‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:454158‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 1:1787895‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:1819575‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:1208885‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:2813322‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:598149‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaaccaatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 1:1735597‑M1/1‑3 (MQ=255) aTaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggt > 2:1842545‑M1/1‑2 (MQ=255) aTaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggt > 2:2324265‑M1/1‑2 (MQ=255) aTaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggt > 2:1537320‑M1/1‑2 (MQ=255) taaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtc < 2:400396‑M1/100‑100 (MQ=255) taaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtc > 2:608825‑M1/1‑1 (MQ=255) taaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtc > 1:51670‑M1/1‑1 (MQ=255) | ACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG > NC_000913/3423723‑3423921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |