New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1432784NA (NA)9 (0.090) 8/168 NT NA coding (374/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
?NC_000913 = 1432795 NA (NA)coding (385/576 nt) tfaR Rac prophage; putative tail fiber assembly protein

AAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCA  >  NC_000913/1432718‑1432823
                                                                             |                            
aaagggAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGAAAAAAAACTGTTCCGGATCCGGGAGGAAAAAAAAAAAAAAAACAAcc         <  1:410252/96‑1 (MQ=1)
       gtgtCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCa  <  1:1821742/96‑1 (MQ=1)
                                                                             |                            
AAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCA  >  NC_000913/1432718‑1432823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.