BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3344992 =	91 (0.880)	13 (0.140)	5/158	NT	15.1%	coding (276/1434 nt)	rpoN	RNA polymerase, sigma 54 (sigma N) factor
*	?	NC_000913	3345024 =	66 (0.720)	13 (0.140)	5/158	NT	15.1%	coding (308/1434 nt)	rpoN	RNA polymerase, sigma 54 (sigma N) factor

Only 100 of 105 total aligned reads displayed.

GACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGAC  >  NC_000913/3344927‑3345121

caggtaatcctgcaaggtctgcgtcgtttcgctctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGCGGTGAc                                                                                                  >  2:2175879‑M1/66‑99 (MQ=255)

   gtaaccctgccaggtcggcgtcgtctcgccctggtacaccggcagctcgtcgtaaatgtagtCACCGCTGGTACACCATCCGGCACCAGCGGTGAc                                                                                                  >  1:2475334‑M1/63‑96 (MQ=255)

   gcgcTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACa                                                                                              >  2:629959/1‑100 (MQ=255)

     gcTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACAtt                                                                                            <  2:1212121/100‑1 (MQ=255)

      cTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTg                                                                                           <  1:2583855/100‑1 (MQ=255)

       tCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTga                                                                                          >  1:1157808/1‑100 (MQ=255)

        cGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgac                                                                                         >  2:2412975/1‑100 (MQ=255)

         gAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgacg                                                                                        <  2:1348424/100‑1 (MQ=255)

         gAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgacg                                                                                        >  2:28533/1‑100 (MQ=255)

           aCAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgacgac                                                                                      <  2:768381/100‑1 (MQ=255)

            cAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGacgacg                                                                                     <  2:1526439/100‑1 (MQ=255)

              aaaaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAg                                                                                   >  2:1612520/1‑100 (MQ=255)

                aaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAgat                                                                                 >  2:641032/1‑98 (MQ=255)

                aaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCACTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCt                                                                                 >  1:983190/1‑100 (MQ=255)

                  gagaTGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGc                                                                               <  2:2669723/100‑1 (MQ=255)

                   agaTGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGcc                                                                              >  2:2247866/1‑100 (MQ=255)

                    gaTGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCg                                                                             >  2:333762/1‑100 (MQ=255)

                       gCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTc                                                                          >  2:814883/1‑100 (MQ=255)

                        ccGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCt                                                                         >  2:789720/1‑100 (MQ=255)

                        ccGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCt                                                                         <  2:1099366/100‑1 (MQ=255)

                        ccGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCt                                                                         >  1:2126956/1‑100 (MQ=255)

                         cGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTa                                                                        <  2:730090/100‑1 (MQ=255)

                          ggAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTAc                                                                       <  2:172448/100‑1 (MQ=255)

                           gAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTAcc                                                                      >  2:1939492/1‑100 (MQ=255)

                            aaGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCa                                                                     >  1:2369515/1‑100 (MQ=255)

                              gagCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAgg                                                                   <  1:2302338/100‑1 (MQ=255)

                              gagCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAgg                                                                   <  2:17057/100‑1 (MQ=255)

                               agCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAggg                                                                  <  2:2400122/100‑1 (MQ=255)

                                gCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGc                                                                 >  2:2830630/1‑100 (MQ=255)

                                gCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGc                                                                 <  2:2278762/100‑1 (MQ=255)

                                gCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGCGACTACATTGACCACGAGCTGCCGGTCTACCAGGGc                                                                 >  1:2394520/1‑100 (MQ=255)

                                 cTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCg                                                                <  1:694082/100‑1 (MQ=255)

                                     cGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAac                                                            <  2:1875757/100‑1 (MQ=255)

                                     cGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAac                                                            <  1:1165200/100‑1 (MQ=255)

                                     cGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAac                                                            >  2:2492696/1‑100 (MQ=255)

                                     cGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCAGCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAac                                                            <  1:1566428/100‑1 (MQ=255)

                                         cGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAacgacg                                                        <  1:403182/100‑1 (MQ=255)

                                          gATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGc                                                       <  2:2430041/100‑1 (MQ=255)

                                           aTGCCAGCTGAGACCCCATATACACCGCTGGGACACCATCCGGCACCAGCGGGGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCa                                                      <  1:2737991/100‑1 (MQ=255)

                                              ccAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGAc                                                   >  1:2854245/1‑100 (MQ=255)

                                              ccAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGAc                                                   <  2:498476/100‑1 (MQ=255)

                                              ccAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGAc                                                   >  1:203768/1‑100 (MQ=255)

                                               cAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGAcc                                                  >  1:2450606/1‑100 (MQ=255)

                                                aGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCt                                                 >  2:331489/1‑100 (MQ=255)

                                                  ttGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTg                                               <  1:477988/100‑1 (MQ=255)

                                                   tGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGc                                              <  2:2268530/100‑1 (MQ=255)

                                                    gggACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCa                                             <  2:709728/100‑1 (MQ=255)

                                                    gggACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCa                                             >  2:1219633/1‑100 (MQ=255)

                                                     ggACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAg                                            <  2:2369530/100‑1 (MQ=255)

                                                     ggACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAg                                            >  2:1926176/1‑100 (MQ=255)

                                                       acacCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAgg                                           <  1:143714/99‑1 (MQ=255)

                                                        cacCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGAt                                         >  2:1131089/1‑100 (MQ=255)

                                                          ccATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTa                                       <  2:1901660/100‑1 (MQ=255)

                                                          ccATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGAAGGATTa                                       >  1:1080277/1‑100 (MQ=255)

                                                           cATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTAc                                      <  1:2492681/100‑1 (MQ=255)

                                                               tACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGa                                  <  2:1770163/100‑1 (MQ=255)

                                                               tACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGa                                  >  2:2427716/1‑100 (MQ=255)

                                                               gtgaccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTg                                   >  1:1298910‑M2/35‑99 (MQ=255)

                                                               gtcaccgctggtgccggatggtgtaccagcggtgACTACATTTACGACGAGCTGCCGGTGTACCAGGGCGAGACGACGCCGACCTGGCAGGGTTAc                                      >  1:2475334‑M2/35‑96 (MQ=255)

                                                               gtcaccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGAGCGAAACGACGCAGACCTTGCAGGATTACCTg                                   >  2:2175879‑M2/35‑99 (MQ=255)

                                                                acacCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGagatcggaag                                 >  1:2776765/1‑91 (MQ=255)

                                                                 caccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGCTTACCTGAtg                                >  1:929788‑M2/33‑100 (MQ=255)

                                                                 caccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtg                                >  2:708645‑M2/33‑100 (MQ=255)

                                                                 caccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtg                                >  2:1121429‑M2/33‑100 (MQ=255)

                                                                 CACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtg                                >  2:894393‑M1/1‑100 (MQ=255)

                                                                 CACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtg                                >  1:2439355‑M1/1‑100 (MQ=255)

                                                                 CACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtg                                <  1:251483‑M1/100‑1 (MQ=255)

                                                                  accgctggtgccggatggtgtaccagcggtgACTACCTTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgt                               >  1:708748‑M2/32‑100 (MQ=255)

                                                                  ACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgt                               <  2:907505‑M1/100‑1 (MQ=255)

                                                                   ccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgtg                              >  2:1451746‑M2/31‑100 (MQ=255)

                                                                   ccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgtg                              >  1:1164766‑M2/31‑100 (MQ=255)

                                                                   ccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgtg                              >  2:2642770‑M2/31‑100 (MQ=255)

                                                                   CCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgtg                              <  2:1649808‑M1/100‑1 (MQ=255)

                                                                   CCGCTGGTACACCATCCGGCACCAGCGGTGACTACATGGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgtg                              >  1:1312656‑M1/1‑100 (MQ=255)

                                                                     gctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGc                            >  2:736868‑M2/29‑100 (MQ=255)

                                                                     gctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGc                            >  1:1759765‑M2/29‑100 (MQ=255)

                                                                       TGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAg                          >  1:1275351‑M1/1‑100 (MQ=255)

                                                                        GGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAgg                         <  1:2911472‑M1/100‑1 (MQ=255)

                                                                         GTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTATACCAGGGCGAAACGACGCAGACCTTGCAGGAGTACCTGATGTGGCAGGt                        >  1:2503729‑M1/1‑100 (MQ=255)

                                                                          TACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGCCCTTGCAGGATTACCTGATGTGGCAGGtt                       <  2:901393‑M1/100‑1 (MQ=255)

                                                                           acacCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTg                      <  1:1220196/100‑1 (MQ=255)

                                                                            cacCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGa                     >  2:361570/1‑100 (MQ=255)

                                                                             acCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAg                    <  1:1013291/100‑1 (MQ=255)

                                                                              ccATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGc                   >  2:110564/1‑100 (MQ=255)

                                                                              ccATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGc                   >  1:1661895/1‑100 (MQ=255)

                                                                              ccATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGc                   >  1:1190788/1‑100 (MQ=255)

                                                                                agccGGCACCAGCGGTGACTTCATGGACGCCGAGGTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGc                   <  1:1969369/96‑1 (MQ=255)

                                                                                  ccGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTg                 >  1:2001289/1‑98 (MQ=255)

                                                                                  ccGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGac               <  2:2602316/100‑1 (MQ=255)

                                                                                    ggCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGacac             <  1:2597070/100‑1 (MQ=255)

                                                                                     gCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCCGGTTGAGCTGACAcc            >  1:2877865/1‑100 (MQ=255)

                                                                                         cagcggtgACTCCATTGACGACGAGCTGCCGGTCTCCCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGCGGCAGGTTCAACTGCCACCg           >  1:2763496‑M2/9‑97 (MQ=255)

                                                                                         cagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGttt        >  1:433250‑M2/9‑100 (MQ=255)

                                                                                           gcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTc      <  2:2477401‑M2/94‑1 (MQ=255)

                                                                                            cggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGTATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTcc     <  2:294170‑M2/95‑1 (MQ=255)

                                                                                             ggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTttcag    <  2:1749488‑M2/96‑3 (MQ=255)

                                                                                             ggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCg    <  2:430304‑M2/96‑1 (MQ=255)

                                                                                              gtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTcc     <  1:1020977‑M2/95‑1 (MQ=255)

                                                                                               tgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGac  <  1:71220‑M2/98‑1 (MQ=255)

                                                                                               tgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGac  <  2:2300554‑M2/98‑1 (MQ=255)

GACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGAC  >  NC_000913/3344927‑3345121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.