New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3620123 =NA (NA)7 (0.070) 6/166 NT 100% coding (932/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620147 = 0 (0.000)coding (956/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

CAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACAC  >  NC_000913/3620049‑3620246
                                                                                                  |                                                                                                   
ccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagc                                                                                                    <  2:768150‑M2/2‑1 (MQ=255)
ccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagc                                                                                                    >  2:525682‑M2/99‑100 (MQ=255)
ccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagc                                                                                                    >  1:529956‑M2/99‑100 (MQ=255)
ccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagc                                                                                                    >  1:492956‑M2/99‑100 (MQ=255)
 cggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcg                                                                                                   <  1:892301‑M2/3‑1 (MQ=255)
 cggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcg                                                                                                   <  1:413566‑M2/3‑1 (MQ=255)
  ggtatttatcatcgtaagtaaagctgcgcatctgtttgccagtacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcgg                                                                                                  <  1:1370847‑M2/4‑1 (MQ=255)
   gtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggc                                                                                                 <  2:1010848‑M2/5‑1 (MQ=255)
    tatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcg                                                                                                <  1:2637257‑M2/6‑1 (MQ=255)
    tatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcg                                                                                                >  2:1681615‑M2/95‑100 (MQ=255)
     atttatcatcgtaagtaaagcttcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggc                                                                                                 <  1:2681810‑M2/5‑1 (MQ=255)
       ttctcgtcgtaagtaaagctgcccacttttttgccactactgtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcg                                                                                              <  1:2390741‑M2/8‑3 (MQ=255)
            atcgtaaggaaagctgcgcacctgtttgccactacggtcatacactaccgccagttcgcagcgtggcgtccagccatagcgcacaagcggcg                                                                                                >  1:2849825‑M2/87‑92 (MQ=255)
                      aagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccaGCGGCGAACTGGCGGTGGTGTATg                                                                              <  2:69331‑M2/24‑1 (MQ=255)
                                                            gttcgccgcgtggcgtccagccatagcgcaccagcggcGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACgat                                        >  1:807056‑M2/39‑100 (MQ=255)
                                                             ttcgccgcgtggcgtccagccatagcgcaccagcggcGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACgatg                                       >  2:2792868‑M2/38‑100 (MQ=255)
                                                               cagttcgccgcgtggcgtccagccatagcgcaccaGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACgatgat                                     >  1:376285‑M2/36‑100 (MQ=255)
                                                                gccgcgtggcgtccagccatagcgcaccagcggcGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATa                                    >  2:1006916‑M2/35‑100 (MQ=255)
                                                                gccgcgtggcgtccagccatagcgcaccagcggcGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATa                                    >  2:29855‑M2/35‑100 (MQ=255)
                                                                    cgccgcgtggcgtccagccatagcgcaccaGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATa                                >  1:1201140‑M2/31‑100 (MQ=255)
                                                                                                  GCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCacac  <  2:2614539‑M2/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
CAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACAC  >  NC_000913/3620049‑3620246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.