BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4557468 =	93 (0.900)	7 (0.080)	5/156	NT	8.8%	coding (822/912 nt)	hypT	hypochlorite‑responsive transcription factor
*	?	NC_000913	4557501 =	64 (0.700)	7 (0.080)	5/156	NT	8.8%	coding (789/912 nt)	hypT	hypochlorite‑responsive transcription factor
Rejected: Frequency below cutoff threshold.

Only 100 of 114 total aligned reads displayed.

GCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAGCTCGCT  >  NC_000913/4557402‑4557599

tgtgggattgcctggctgccggagtacgccatccaacaagaaattcgcagcgggaagctcgttgtaCTGAATCGGGATCACCAGTTCGTCCCGATTCAGt                                                                                                    >  1:173035‑M1/67‑100 (MQ=255)

 gtgggattgcctggctgccggagtacgccatccaacaagaaattcgcagcgggaagctcgttgtaCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTa                                                                                                   >  1:310526‑M1/66‑100 (MQ=255)

  tgcgattgcctgcctgccggagtacgccatccaacaagaaattcgcagcgggaagctcgttgtaCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTAc                                                                                                  >  1:10687‑M1/65‑100 (MQ=255)

     gTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAAc                                                                                               <  2:761283/100‑1 (MQ=255)

     gTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAAc                                                                                               <  1:1653627/100‑1 (MQ=255)

     gTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAAc                                                                                               <  1:1579499/100‑1 (MQ=255)

        cACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAg                                                                                            >  1:73154/1‑100 (MQ=255)

        cACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAg                                                                                            >  2:1326230/1‑100 (MQ=255)

         aCGCCAGAATCGTTCGGCAACGGGATTCATGCTGGTTTTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGc                                                                                           <  2:210997/100‑1 (MQ=255)

         aCGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGc                                                                                           <  2:1179935/100‑1 (MQ=255)

         aCGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGc                                                                                           <  2:1462757/100‑1 (MQ=255)

             cAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTcc                                                                                       <  1:1954677/100‑1 (MQ=255)

              aGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTccc                                                                                      <  2:369125/100‑1 (MQ=255)

               gAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCg                                                                                     >  2:456630/1‑100 (MQ=255)

               gAAGCGTGCGACAACGGGATTCATGCGGGTACACATCCGGTGTGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGAGTCACTACAACg                                                                                              >  1:1855997/1‑91 (MQ=255)

                   cGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGc                                                                                 <  2:1905981/100‑1 (MQ=255)

                   cGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGc                                                                                 >  1:2211801/1‑100 (MQ=255)

                        ggCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAAtt                                                                            <  1:452311/100‑1 (MQ=255)

                         gCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAAttt                                                                           <  2:125021/100‑1 (MQ=255)

                          cAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTc                                                                          <  2:2235171/100‑1 (MQ=255)

                           aaCGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCt                                                                         <  2:1692133/100‑1 (MQ=255)

                            aCGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCtt                                                                        >  1:1350251/1‑100 (MQ=255)

                            aCGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCtt                                                                        >  1:1350214/1‑100 (MQ=255)

                              gggATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCttgt                                                                      >  2:2505729/1‑100 (MQ=255)

                                   tCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGAt                                                                 <  1:285951/100‑1 (MQ=255)

                                    cATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATg                                                                <  1:2723477/100‑1 (MQ=255)

                                    cATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATg                                                                >  2:328144/1‑100 (MQ=255)

                                       gCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCg                                                             <  2:1163239/100‑1 (MQ=255)

                                       gCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCg                                                             <  2:1722939/100‑1 (MQ=255)

                                        cGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGt                                                            <  2:1204836/100‑1 (MQ=255)

                                        cGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGt                                                            <  1:1218542/100‑1 (MQ=255)

                                        cGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGt                                                            <  1:447299/100‑1 (MQ=255)

                                        cGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGt                                                            >  2:764611/1‑100 (MQ=255)

                                                cATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGc                                                    >  2:1471473/1‑100 (MQ=255)

                                                 aTCCGGTATGCATAGGCCTGAAGCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCa                                                   >  2:578642/1‑100 (MQ=255)

                                                 aTCCGGTATACATAGGCCTGACAGAGGATCACCAATTCGTCCCGATTCAGTACAACTAGCTTTCCGATCCCCATTTACTGTTGGATGGTTTACTGCg                                                      >  1:2057131/1‑97 (MQ=255)

                                                  tCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAg                                                  <  2:1276043/100‑1 (MQ=255)

                                                  tCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAg                                                  <  1:428571/100‑1 (MQ=255)

                                                   ccGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGc                                                 >  2:477022/1‑100 (MQ=255)

                                                    cGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGcc                                                <  2:1076960/100‑1 (MQ=255)

                                                     ggTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCa                                               >  2:1871605/1‑100 (MQ=255)

                                                     ggTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCa                                               >  1:1384627/1‑100 (MQ=255)

                                                     ggTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCa                                               >  2:383226/1‑100 (MQ=255)

                                                      gTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAg                                              <  1:1347077/100‑1 (MQ=255)

                                                       tATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAgg                                             <  2:61853/100‑1 (MQ=255)

                                                       tATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAgg                                             <  2:1390442/100‑1 (MQ=255)

                                                       tATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAgg                                             <  2:194844/100‑1 (MQ=255)

                                                         tGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCa                                           >  1:1133834/1‑100 (MQ=255)

                                                          gCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCaa                                          >  1:775542/1‑100 (MQ=255)

                                                          gCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAACCAGGCaa                                          >  1:776052/1‑100 (MQ=255)

                                                           cATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGCTGGCGTACTCCGGCAGCCAGGCAAt                                         >  1:1198006/1‑100 (MQ=255)

                                                            aTAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATc                                        <  2:749936/100‑1 (MQ=255)

                                                               gtactgaatcgggacgaactggtgatcccgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGGCAGGCAATCGca                                     >  1:10687‑M2/37‑100 (MQ=255)

                                                               ggCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAAGGAGCTTCCCGCTGCGAATGACTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCca                                     >  1:1585232/1‑100 (MQ=255)

                                                               ggCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCca                                     >  2:1513566/1‑100 (MQ=255)

                                                                tactgaatcgggacgaactggtgatcccgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCcac                                    >  1:310526‑M2/36‑100 (MQ=255)

                                                                tactgaatcgggacgaactggtgatcccgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCcac                                    >  2:1293835‑M2/36‑100 (MQ=255)

                                                                gCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCcac                                    >  2:1238900/1‑100 (MQ=255)

                                                                gCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCcac                                    >  2:2595788/1‑100 (MQ=255)

                                                                gCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCcac                                    >  1:1939973/1‑100 (MQ=255)

                                                                gCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCcac                                    <  1:2367653/100‑1 (MQ=255)

                                                                 ccTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCcaca                                   >  1:147536/1‑100 (MQ=255)

                                                                  ctgaatcgggacgaactggtgatcccgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAg                                  >  2:2251100‑M2/34‑100 (MQ=255)

                                                                  CTGAATCGGGCTCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAg                                  >  1:2123781‑M1/1‑100 (MQ=255)

                                                                   tgaatcgggacgagctggtgatcccgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGc                                 >  1:2141435‑M2/33‑100 (MQ=255)

                                                                    GAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGcc                                >  1:1422682‑M1/1‑100 (MQ=255)

                                                                    GAATCGCGATCACCGGTTCGTCCAGATTCAGTACAACGAGCTTCCCGCTGCGAAGTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAg                                  >  1:2123809‑M1/1‑98 (MQ=255)

                                                                        CGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCg                            >  2:1275233‑M1/1‑100 (MQ=255)

                                                                         GGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGa                           <  2:1722539‑M1/100‑1 (MQ=255)

                                                                         GGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGa                           <  2:2112964‑M1/100‑1 (MQ=255)

                                                                          GGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAg                          >  1:1717566‑M1/1‑100 (MQ=255)

                                                                           GATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAgg                         <  2:1890889‑M1/100‑1 (MQ=255)

                                                                            ATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAggg                        >  1:12103‑M1/1‑100 (MQ=255)

                                                                            ATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAggg                        <  2:2820719‑M1/100‑1 (MQ=255)

                                                                            ATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAggg                        >  1:2744562‑M1/1‑100 (MQ=255)

                                                                            ATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAggg                        <  1:1288278‑M1/100‑1 (MQ=255)

                                                                            ATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAggg                        >  1:1936210‑M1/1‑100 (MQ=255)

                                                                              cACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGGACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCa                      <  1:2468771/100‑1 (MQ=255)

                                                                               aCCAGTTCGTCCCGATTCAGTACAACGACCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCCGCCAGGCAATCCCACAGCCGTCGAGGGCaa                     >  1:2011307/1‑100 (MQ=255)

                                                                                   gTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTg                 <  1:1217293/100‑1 (MQ=255)

                                                                                      cGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCtt              <  2:871780/100‑1 (MQ=255)

                                                                                      cGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCtt              >  1:2806225/1‑100 (MQ=255)

                                                                                      cGTCCCGATTCAGTACAACGAGCTGCCCGCTGCGAATTTCTTGTTGGATGGCGTACGCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCtt              <  1:147304/100‑1 (MQ=255)

                                                                                       gTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCttt             >  1:1287688/1‑100 (MQ=255)

                                                                                        tcccgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTa            <  2:2627794‑M2/89‑1 (MQ=255)

                                                                                        tcccgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTa            >  2:609877‑M2/12‑100 (MQ=255)

                                                                                        tcccgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTa            >  1:2482686‑M2/12‑100 (MQ=255)

                                                                                         cccgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTa            <  1:921958‑M2/89‑1 (MQ=255)

                                                                                          ccgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTaaa          >  2:2535915‑M2/10‑100 (MQ=255)

                                                                                          ccgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTaaa          >  2:2355165‑M2/10‑100 (MQ=255)

                                                                                           cgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTaaaa         <  2:871982‑M2/92‑1 (MQ=255)

                                                                                           cgattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTaaaa         <  2:2257212‑M2/92‑1 (MQ=255)

                                                                                           cgattcagTAAAACGAGCTCCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCTGCAGCCAGGCAATTCCACAGCCGTCTAGGGCAACCTGCTTTaaaa         <  1:2011556‑M2/92‑1 (MQ=255)

                                                                                            gattcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAg        <  2:2626697‑M2/93‑1 (MQ=255)

                                                                                             attcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAgc       <  1:2784933‑M2/94‑1 (MQ=255)

                                                                                              ttcagTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAgct      >  1:1138104‑M2/6‑100 (MQ=255)

                                                                                                 agTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAgctcgc   <  2:340348‑M2/98‑1 (MQ=255)

                                                                                                 agTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAgctcgc   <  2:2703275‑M2/98‑1 (MQ=255)

                                                                                                 agTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAgctcgc   >  2:2696337‑M2/3‑100 (MQ=255)

                                                                                                  gTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAgctcgct  <  2:1777766‑M2/99‑1 (MQ=255)

GCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAGCTCGCT  >  NC_000913/4557402‑4557599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.