Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3423823–3424601	3424601	1–779	84 [0]	[61] 63	[rrlD]	[rrlD]

CACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGC  >  NC_000913/3424554‑3424701                                                 |                                                                                                       cacTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGAATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTa                                                     >  2:1870307/1‑100 (MQ=14)  acTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTa‑a                                                   >  1:868381/1‑100 (MQ=32)     gTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGcc                                                >  2:2836003/1‑100 (MQ=33)      tCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCt                                               >  2:1537663/1‑100 (MQ=33)       ccGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCACGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑c                                             >  1:2482193/1‑100 (MQ=17)       ccGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑c                                             >  2:1859820/1‑100 (MQ=33)       ccGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑c                                             <  2:2847608/100‑1 (MQ=33)        cGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑cc                                            >  2:2078297/1‑100 (MQ=33)        cGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑cc                                            >  2:684660/1‑100 (MQ=33)         gCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑ccc                                           >  2:736419/1‑100 (MQ=32)         gCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑ccc                                           <  2:1107558/100‑1 (MQ=33)         gCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑ccc                                           <  2:2410832/100‑1 (MQ=33)           aaCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCAc                                         <  2:214873/100‑1 (MQ=33)           aaCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCAc                                         <  1:771925/100‑1 (MQ=33)           aaCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGGCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCAc                                         >  1:941236/1‑100 (MQ=17)            aCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCAcc                                        >  2:2827717/1‑100 (MQ=33)            aCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCAcc                                        <  2:2782246/100‑1 (MQ=33)             cccGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑t                                      <  2:2468923/100‑1 (MQ=33)             cccGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑t                                      >  2:1993374/1‑100 (MQ=33)             cccGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTCGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCGACACTTCTA‑AGCCT‑CCCACC‑t                                      >  1:1083414/1‑100 (MQ=16)              ccGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑Ta                                     >  2:690245/1‑100 (MQ=33)              ccGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑Ta                                     >  2:948374/1‑100 (MQ=33)               cGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TAt                                    <  1:1866155/100‑1 (MQ=33)               cGGATTACGGGTCAACGTTAGAACATCAAACACTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGCCCACACTTCTA‑AGCCT‑CCCACC‑TAt                                    >  1:556121/1‑100 (MQ=12)                 gATTACGGGTCAACGTTAGAACATCAAACATTAATGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATcc                                  <  1:371827/100‑1 (MQ=18)                 gATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATcc                                  <  2:394037/100‑1 (MQ=32)                 gATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATcc                                  <  2:1831469/100‑1 (MQ=33)                  aTTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCt                                 <  1:1547661/100‑1 (MQ=33)                   ttACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTa                                <  2:896110/100‑1 (MQ=33)                    tACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTac                               <  2:542369/100‑1 (MQ=33)                    tACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTac                               <  2:1487142/100‑1 (MQ=33)                    tACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGCCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTac                               <  2:2029537/100‑1 (MQ=18)                     aCGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTaca                              <  1:1773659/100‑1 (MQ=33)                      cGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTacac                             <  2:1778189/100‑1 (MQ=33)                       gggTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTAcaca                            >  1:1348990/1‑100 (MQ=32)                        ggTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACAt                           >  2:2335588/1‑100 (MQ=32)                        ggTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACAt                           >  2:366878/1‑100 (MQ=33)                        ggTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACAt                           >  2:2076376/1‑100 (MQ=33)                         gTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATc                          >  1:435827/1‑100 (MQ=33)                           cAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCaa                        <  2:1938138/100‑1 (MQ=33)                              cGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGc                     <  2:1397684/100‑1 (MQ=33)                              cGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGc                     <  2:1922250/100‑1 (MQ=33)                              cGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGc                     <  2:1641418/100‑1 (MQ=33)                              cGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGc                     >  1:826730/1‑100 (MQ=33)                               gTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGcc                    <  2:2861962/100‑2 (MQ=18)                                ttAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTc                   <  2:726895/100‑1 (MQ=32)                                  aGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCaa                 >  1:2852654/1‑100 (MQ=33)                                  aGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCaa                 <  2:2837549/100‑1 (MQ=33)                                  aGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTACTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCaa                 <  1:1954523/100‑1 (MQ=17)                                   gAACAATAAAAATTAAAAGATGGAATTTCAAGATCGGCTACATGCAGACTGGCGTCCACACTT‑TA‑AGGCTCCCCACT‑TATCCTAAACATCAAAGCTCaa                 >  1:1200385/1‑99 (MQ=0)                                     aCATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCAATGt              <  2:352549/100‑1 (MQ=33)                                     aCATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACAAATCAAGGCTCAATGt              >  1:1214061/1‑100 (MQ=18)                                       aTCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCAATGTTc            <  1:2374712/100‑1 (MQ=32)                                          aaaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCAATGtt             >  1:926538/1‑96 (MQ=33)                                          aaaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCAAACTTCTA‑AGGCT‑CCCAGC‑TATCCTACATATCAAGGCTCAATGTTCAgt         >  1:2896731/1‑100 (MQ=11)                                           aaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGTC‑TTTTTAATGATA‑CGGCC‑ACCACCGTGATCTACACATCAAGGCTCAATGTTCAgtg        <  1:958875/100‑1 (MQ=2)                                           aaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCAATGTTCAgtg        <  1:1690238/100‑1 (MQ=33)                                             cATTAAATGGTTGTATTTCAAGGTCGGCTCCATGCAGACTTGCGT‑TTTAATGATACGGCCT‑CCACCG‑AAATCTACACATCAAGGCTCAATGTTCAGTGTc      <  1:2030913/100‑1 (MQ=0)                                              aTTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCa     >  2:589654/1‑100 (MQ=33)                                               ttAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCaa    >  2:1714388/1‑100 (MQ=33)                                                tAAATGGTGGTATTTCAAGGTCGGCTCCATGCAGATTTTTTTCTTAACGTCTA‑GGCGT‑CCACCG‑AAATCTACACATCAAGGCTCAATGTTCAGTGTCaa    <  1:2662802/99‑1 (MQ=2)                                                 aaaGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGc  <  2:1464185/100‑1 (MQ=33)                                                 aaaGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGc  <  2:1441416/100‑1 (MQ=33)                                                 |                                                                                                       CACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCT‑CCCACC‑TATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGC  >  NC_000913/3424554‑3424701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑