| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,187,314 | C→G | 17.0% | intergenic (+16/+66) | rcnB → / ← yehA | periplasmic modulator of Ni and Co efflux/putative fimbrial‑like adhesin protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,187,314 | 0 | C | G | 17.0% | 194.6 / 30.1 | 75 | intergenic (+16/+66) | rcnB/yehA | periplasmic modulator of Ni and Co efflux/putative fimbrial‑like adhesin protein |
| Reads supporting (aligned to +/- strand): ref base C (28/34); new base G (9/4); total (37/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.92e-01 | |||||||||||
ATGGGTGGCGCGTACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTAATGCGGTTGCC > NC_000913/2187215‑2187413 | atGGGTGGCGCGTACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCtcatc < 2:688509/100‑1 (MQ=255) tGGGTGGCGCGTACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTCATCATCGCTAAAAAAAGCCCCCtcatca > 2:1472567/1‑100 (MQ=255) ggTGGCGCGTACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATg < 1:1514687/100‑1 (MQ=255) tGGCGCGTACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAg < 2:1121405/100‑1 (MQ=255) tGGCGAGTACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTAAAAAAAAAAAAAAAAGCCCCCTCATCATGAg < 1:1322204/100‑1 (MQ=255) gcgcGTACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAggg < 2:1372235/100‑1 (MQ=255) gcgcGTACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAggg < 2:1895366/100‑1 (MQ=255) cgTACGTGTTGATCAGCGATACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGa < 1:2760079/100‑1 (MQ=255) cgTACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATGATGAgggggc < 1:2410639/100‑2 (MQ=255) cgTACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGa > 2:1790527/1‑100 (MQ=255) tACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATGATGAgggggctt < 2:1247735/100‑4 (MQ=255) tACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATGATGAgggggctt < 2:1588844/100‑4 (MQ=255) tACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGaaa < 2:2197981/100‑1 (MQ=255) cGTGTTGATCAGCGACACCGACGGTAAAATCAGTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATg < 2:355009/100‑1 (MQ=255) tgtTGATCAGCGTCACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTACCATTGCTAAAAAAAGCCCCCTCAGCATGAgggggctttttt < 1:1551506/100‑8 (MQ=255) tGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGac > 2:633182/1‑100 (MQ=255) tGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGac < 2:1489950/100‑1 (MQ=255) tGATCAGCGACACCAACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATGATGAgggggctttttttag < 1:920365/100‑11 (MQ=38) gATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGaca > 1:808714/1‑100 (MQ=255) gATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGaca > 2:2555734/1‑100 (MQ=255) aTCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCTTCATCATGAGGGGGAAATGCATacac > 1:553685/1‑100 (MQ=255) tCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTAACAAAGAAAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACAcc < 1:1472561/100‑1 (MQ=255) gACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGtt > 1:142721/1‑100 (MQ=255) gACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGtt > 2:721611/1‑100 (MQ=255) ccGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTGTCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTAttt > 2:1972092/1‑100 (MQ=255) ggTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTttat < 2:2464853/100‑1 (MQ=255) ggTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTttat < 1:336883/100‑1 (MQ=255) gTAAAATCATTAAAGCCGACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTtta < 2:1694353/98‑1 (MQ=255) aaaaTCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTttattat > 2:95039/1‑100 (MQ=255) aaaaTCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTttattat < 2:1893347/100‑1 (MQ=255) aaaTCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTttattatt < 2:1450983/100‑1 (MQ=255) tCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGc > 2:1886463/1‑100 (MQ=255) tCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGc < 2:255996/100‑1 (MQ=255) tCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGc < 2:2636260/100‑1 (MQ=255) tCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCACCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGc > 1:2205208/1‑100 (MQ=255) cATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGGAGTGCAGACACCTTGTTATTTTTTATTATTAGc > 1:1339393/1‑99 (MQ=255) aTTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGcc > 1:2090983/1‑99 (MQ=255) aTTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCa > 1:507604/1‑100 (MQ=255) aTTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCa > 1:1568251/1‑100 (MQ=255) aTTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCa > 2:1143165/1‑100 (MQ=255) aaaGCCTACGACGGTGAGATTTTTTATCATCGCAAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTGTTAGCCACtt > 1:1911012/1‑100 (MQ=255) gCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAACGCCCCCTCATGATGAGGGGGAAATGCAAGAACCTTGATATTTTTTATTATTAGGCACTTGCt > 1:1051249/1‑100 (MQ=255) gCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCt > 2:1668914/1‑100 (MQ=255) gCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCt > 2:2094772/1‑100 (MQ=255) ccTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTc < 2:2559266/100‑1 (MQ=255) cgacgGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTct < 1:1174894/100‑1 (MQ=255) gactgtcataTTTTTTATCATCGCTAAAAAACTCCCCCTCATCATGAGGGAGAAATGCCGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTct < 1:1339401/90‑1 (MQ=255) acgGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTcttg < 2:2217077/100‑1 (MQ=255) acgGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTcttg > 2:1733710/1‑100 (MQ=255) cgGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTcttgc < 1:1143160/100‑1 (MQ=255) cgGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTcttgc < 2:151743/100‑1 (MQ=255) ggTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTcttgct < 1:786150/100‑1 (MQ=255) tGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTcttgcttg < 2:1121519/100‑1 (MQ=255) tGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTcttgcttg < 1:95038/100‑1 (MQ=255) gagaTTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGt < 2:1263492/100‑1 (MQ=255) agaTTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGtt < 2:1129718/100‑1 (MQ=255) ttttATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAg > 2:2264222/1‑100 (MQ=255) tATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTAATAGCCACTTGCTCGTCTTGCTTGTTATTAga < 1:1890305/98‑2 (MQ=255) tcatcGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTa > 1:592605/1‑100 (MQ=255) catcGGTAAAAAAAGTCACCTCATCATATGGGGGCACTGCAGTCACCTTCTTATTTTTTGTTATTAGCCACTTGCGCGTCTTGCTTGttattatt < 1:2553355/95‑3 (MQ=255) atcGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTAtt < 1:2450484/100‑1 (MQ=255) atcGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTAtt > 1:2261743/1‑100 (MQ=255) gCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCGGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCa < 2:2050856/100‑1 (MQ=255) tAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACg < 2:1805968/100‑1 (MQ=255) aaaaaaaGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGt > 1:1030888/1‑100 (MQ=255) aaaaaaGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGtt > 1:432598/1‑100 (MQ=255) aaaaaaGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTAATATTAGCCACTTTCTCGTCTTGTTAGTTATTAGTCGTATTTCACGtt > 2:117242/1‑100 (MQ=255) aaaaaaGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTCTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGtt > 1:652414/1‑100 (MQ=255) ttcccccTCATGATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTa > 2:2296992/3‑100 (MQ=255) ttcccccTCATGATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTa > 2:2299168/3‑100 (MQ=255) ttcccccTCATGATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTa > 2:297656/3‑100 (MQ=255) tcccccTCATGATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTaa > 2:1720818/2‑100 (MQ=255) tcccccTCATGATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTaa > 2:2305944/2‑100 (MQ=255) ccctcTCAGGATCAGCGGGAAATGCAGACACCGTGTTTTTTCCTATCATGATTCACTTGCCCCCCTTGCTGTTTGTTATCCATATTTCAc > 1:1889597/1‑90 (MQ=255) ccccTCATGATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTAATg > 2:2433112/1‑100 (MQ=255) ccccTCATGATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTAATg > 1:1637314/1‑100 (MQ=255) cccTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTAATGc > 2:2610236/1‑100 (MQ=255) tcatcaTGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTAATGCGGt > 1:682293/1‑100 (MQ=255) tcatcaTGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTAATGCGGt < 1:553997/100‑1 (MQ=255) atcatGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTAATGCGGTTg < 1:1853186/100‑1 (MQ=255) catGAGGGGTAAATGCAGACCCCTTGTTATTTTTTAGTATGAGCCACTTGCTCTTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTAATGCgg < 1:2257408/95‑1 (MQ=255) catGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTAATGCGGTTGcc > 1:1653670/1‑100 (MQ=255) catGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTAATGCGGTTGcc > 2:566351/1‑100 (MQ=255) catGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTAATGCGGTTGcc < 2:1873940/100‑1 (MQ=255) | ATGGGTGGCGCGTACGTGTTGATCAGCGACACCGACGGTAAAATCATTAAAGCCTACGACGGTGAGATTTTTTATCATCGCTAAAAAAAGCCCCCTCATCATGAGGGGGAAATGCAGACACCTTGTTATTTTTTATTATTAGCCACTTGCTCGTCTTGCTTGTTATTAGTCGTATTTCACGTTGATTAATGCGGTTGCC > NC_000913/2187215‑2187413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |