| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,247,812 | C→T | 35.9% | Q14* (CAG→TAG) | yqjA → | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,247,812 | 0 | C | T | 35.9% | 115.5 / 107.3 | 114 | Q14* (CAG→TAG) | yqjA | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
| Reads supporting (aligned to +/- strand): ref base C (35/38); new base T (22/19); total (57/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.85e-01 | |||||||||||
Only 100 of 118 total aligned reads displayed.
TTGCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCCGGCGGC > NC_000913/3247714‑3247909 | ttGCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCa < 2:2682243/100‑1 (MQ=255) tGCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAg < 1:402054/100‑1 (MQ=255) gCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAgg < 2:1591546/100‑1 (MQ=255) tAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGAttt > 1:1532843/1‑100 (MQ=255) tAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGAttt < 2:362041/100‑1 (MQ=255) aGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGAtttt < 2:2007394/100‑1 (MQ=255) gTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTg > 2:1574053/1‑100 (MQ=255) gTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTg < 2:2111583/100‑1 (MQ=255) tGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGa < 2:263969/100‑1 (MQ=255) gCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGaa > 1:275688/1‑100 (MQ=255) gCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGaa > 2:1793292/1‑100 (MQ=255) cATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGaaa < 2:2830650/100‑1 (MQ=255) aTCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAAc > 2:2612355/1‑100 (MQ=255) cTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAAccc < 2:2164043/100‑1 (MQ=255) cTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAAccc < 1:1515905/100‑1 (MQ=255) ttttAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCt > 1:1113383/1‑100 (MQ=255) tttAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTg < 1:1654259/100‑1 (MQ=255) tAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGc < 2:1667550/100‑1 (MQ=255) aaaaCCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGcc < 1:182241/100‑1 (MQ=255) aaaaCCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGcc < 2:1854814/100‑1 (MQ=255) aaaCCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCa > 1:431832/1‑100 (MQ=255) aaCCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCaa > 1:792556/1‑100 (MQ=255) ccAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATc > 2:731900/1‑100 (MQ=255) ccAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATc < 1:423064/100‑1 (MQ=255) cGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATc > 2:2222043/1‑100 (MQ=255) cGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATc < 2:1294412/100‑1 (MQ=255) cGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATc < 2:1066701/100‑1 (MQ=255) cGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATc < 2:1692227/100‑1 (MQ=255) gTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCg < 2:759689/100‑1 (MQ=255) ggCGTTAGCCGGTTCACCAGGAATAATGAATGGAACTTTAGACCCAATTGCTGCAAGCCCTGTGGCCGCAGGACGTTGAAACCCTGGCCAATCCATCgat > 1:1525113/1‑100 (MQ=255) gTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAAT‑CATCgat‑ggat < 1:260128/100‑4 (MQ=255) ttAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GAtt < 1:2139093/100‑1 (MQ=255) tAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTg > 2:182447/1‑100 (MQ=255) tAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTg < 1:371880/100‑1 (MQ=255) aaCCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTgg > 1:1035363/1‑100 (MQ=255) ccGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCa > 2:197079/1‑100 (MQ=255) ccGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCa > 2:600441/1‑100 (MQ=255) ccGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCa < 2:893681/100‑1 (MQ=255) gATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTTGGCGCAGGATTTTGAAACCCTGGCCAAT‑CATCGATGGATTGGccag < 1:695317/100‑4 (MQ=255) gATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAAT‑CATCGATGGATTGGccag < 2:38055/100‑4 (MQ=255) gATGCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCAt < 1:2648678/99‑1 (MQ=255) aTTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCAtgt < 2:205741/100‑1 (MQ=255) aTTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAAT‑CATCGATGGATTGGccagg < 2:1378470/100‑5 (MQ=255) tCACCAGGAATAATGAATGCAACTTTTGACCCAATTGCTGCAAGCCTTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCAGCGAT‑CATTGGCAggttg < 1:2728875/100‑1 (MQ=255) cACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCAtgttgt > 1:2858241/1‑100 (MQ=255) cAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTAtt < 2:710959/100‑1 (MQ=255) cAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTAtt > 2:657015/1‑100 (MQ=255) ggAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTAtttt > 1:1597168/1‑100 (MQ=255) gAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTg < 2:1423190/100‑1 (MQ=255) aataatGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGt < 2:2897526/100‑1 (MQ=255) taatGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCt < 1:2495564/100‑1 (MQ=255) taatGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCt < 2:2252897/100‑1 (MQ=255) aatgaatgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCtt < 1:1651003/100‑1 (MQ=255) aatgaatgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCtt > 2:623180/1‑100 (MQ=255) gaatgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCttgtt < 2:1446677/100‑1 (MQ=255) gaatgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCttgtt < 2:1891414/100‑1 (MQ=255) gaatgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCttgtt < 2:1744192/100‑1 (MQ=255) aatgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCttgttt > 1:1654548/1‑100 (MQ=255) tgGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCttgtttgt > 2:1431486/1‑100 (MQ=255) gAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTaa > 1:1973424/1‑100 (MQ=255) gAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGAATTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTaa > 1:1591259/1‑100 (MQ=255) aaCTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAAt < 1:1869419/100‑1 (MQ=255) aaCTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAAt > 1:858382/1‑100 (MQ=255) gACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTc > 1:707770/1‑100 (MQ=255) cccAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCt > 2:434123/1‑100 (MQ=255) cccAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCt > 2:1315790/1‑100 (MQ=255) cccAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCt > 1:2108590/1‑100 (MQ=255) cccAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCt > 2:658436/1‑100 (MQ=255) ccAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCtt < 2:543885/100‑1 (MQ=255) cAATTGCTGCAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGCT‑GATTGGCAGGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTg > 2:75312/1‑100 (MQ=255) cAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTg < 1:1017036/100‑1 (MQ=255) aTTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGaa > 1:478218/1‑100 (MQ=255) aTTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAACCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGaa < 1:1072688/100‑1 (MQ=255) gctgcAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAAc > 2:1759633/1‑100 (MQ=255) gctgcAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAAc < 2:2032695/100‑1 (MQ=255) gctgcAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAAc > 2:1823484/1‑100 (MQ=255) gctgcAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAAc > 1:113097/1‑100 (MQ=255) tgcAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACgg > 2:172074/1‑100 (MQ=255) gcAAGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgc > 1:2456147/1‑100 (MQ=255) gcAAGCCCTGTGGGCGTAGGATTCTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTCTTTTGAATTGTTTGTCATTTTGTTGCTTGAAAACGgc > 1:1983484/1‑100 (MQ=255) gcAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgc > 2:2251269/1‑100 (MQ=255) cAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgct > 1:839797/1‑100 (MQ=255) cAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgct > 1:2539619/1‑100 (MQ=255) aGCCCTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgcttg > 2:171708/1‑100 (MQ=255) aGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgcttg > 1:1071562/1‑100 (MQ=255) gCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgcttgc > 2:212646/1‑100 (MQ=255) gCCCTGTGGGCGCAGGATTTTGAAACCCTGACCAATTCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgcttgc < 1:2696050/100‑1 (MQ=255) gCCCTGTGGGCGCAGGATTTTGAAACCCTCGCCACTCCATCGAT‑GATTCGCATGTTGTATTTCGTCTTGTTTGTAATTTTGTTCCTTGAAAACGgcttgc > 1:978985/1‑100 (MQ=255) cTGTGGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTc > 2:1197631/1‑100 (MQ=255) cTGTGGGCGCAGGATCTGAAAACACTGGTTACTCTATCGAT‑GATTGGCATGTTGTATTTTGTTTTGTTTGTAATTTTGTTCCTTGAAAACGgcttgctt < 1:2231427/99‑1 (MQ=255) tgtgGGCGCAGGATTTTGAAACCCTGACCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTcc < 1:2536533/100‑1 (MQ=255) gtgGGCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcg > 2:1467215/1‑100 (MQ=255) gtgGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcg > 1:1822935/1‑100 (MQ=255) tgGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcgg < 2:389848/100‑1 (MQ=255) ggCGTAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcggcg > 1:2707833/1‑100 (MQ=255) ggCGCAGGATTTTG‑AACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcggcgg < 2:2246760/100‑1 (MQ=255) gcgtAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcggcgg < 2:32414/100‑1 (MQ=255) gcgtAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCcggcgg > 2:2561261/1‑100 (MQ=255) cgcAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCCggcggc < 2:286883/100‑1 (MQ=255) cgcAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCCggcggc > 1:1645668/1‑100 (MQ=255) | TTGCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGAT‑GATTGGCATGTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAACGGCTTGCTTCCGGCGGC > NC_000913/3247714‑3247909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |