Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,763,0030GA23.1% 259.4 / 70.0 130H180Y (CAT→TAT) yfjKradiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
Reads supporting (aligned to +/- strand):  ref base G (38/62);  new base A (30/0);  total (68/62)
Fisher's exact test for biased strand distribution p-value = 7.02e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 131 total aligned reads displayed.

ACTTGTAAAACTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCGGCAAGAGCCACGGTTGGAACA  >  NC_000913/2762904‑2763100
                                                                                                   |                                                                                                 
aCTTGTAAAGCTAGTCAATGACGAAGAGGTCAATGTCGACGATCTCCTGACGCTCTTTCACTCGCTCCTGAGTTCACACATAAACATACTGATCGGAATg                                                                                                   <  1:3021536/100‑1 (MQ=255)
  ttGTAAAACTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGc                                                                                                 <  1:177724/100‑1 (MQ=255)
   tGTAAAACTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGca                                                                                                <  2:37975/100‑1 (MQ=255)
   tGTAAAACTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGca                                                                                                <  1:2079059/100‑1 (MQ=255)
     naaaaCTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGcaca                                                                                              >  1:653440/2‑100 (MQ=255)
      aaaaCTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCacac                                                                                             >  1:297307/1‑100 (MQ=255)
      aaaaCTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCacac                                                                                             >  2:794527/1‑100 (MQ=255)
      aaaaCTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacac                                                                                             >  1:2536248/1‑100 (MQ=255)
      aaaaCTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacac                                                                                             >  1:1374273/1‑100 (MQ=255)
       aaaCTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACt                                                                                            <  1:788606/100‑1 (MQ=255)
       aaaCTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacg                                                                                            >  1:455179/1‑99 (MQ=255)
       aaaCTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacg                                                                                            >  1:2602792/1‑99 (MQ=255)
        aaCTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgt                                                                                           >  1:1975432/1‑98 (MQ=255)
         aCTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTg                                                                                          <  2:196167/100‑1 (MQ=255)
         aCTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtc                                                                                          >  1:1029740/1‑97 (MQ=255)
          cTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTgg                                                                                         >  2:1142882/1‑100 (MQ=255)
          cTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtct                                                                                         >  1:722823/1‑96 (MQ=255)
          cTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtct                                                                                         >  1:2328297/1‑96 (MQ=255)
            cGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGa                                                                                       >  2:2270889/1‑100 (MQ=255)
            cGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtctga                                                                                       >  1:105536/1‑94 (MQ=255)
            cGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtctga                                                                                       >  1:2882440/1‑94 (MQ=255)
             gTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtctgaa                                                                                      >  1:1630193/1‑93 (MQ=255)
             gTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtctgaa                                                                                      >  1:39055/1‑93 (MQ=255)
              tCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAAc                                                                                     <  1:1745582/100‑1 (MQ=255)
              tCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAAc                                                                                     <  2:269465/100‑1 (MQ=255)
              tCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtctgaac                                                                                     >  1:1290339/1‑92 (MQ=255)
              tCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtctgaac                                                                                     >  1:731980/1‑92 (MQ=255)
              tCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtctgaac                                                                                     >  1:526500/1‑92 (MQ=255)
              tCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtctgaac                                                                                     >  1:965738/1‑92 (MQ=255)
              tCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtctgaac                                                                                     >  1:2265701/1‑92 (MQ=255)
              tCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtctgaac                                                                                     >  1:2254774/1‑92 (MQ=255)
               cAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtctgaact                                                                                    >  1:153662/1‑91 (MQ=255)
               cAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCacacgtctgaact                                                                                    >  1:2831997/1‑91 (MQ=255)
                aaTGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGTCTGATCGGAAGAGCacacgtctgaactc                                                                                   >  1:178317/1‑90 (MQ=255)
                  tGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACtgtg                                                                                 <  1:1142810/100‑1 (MQ=255)
                  tGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACtgtg                                                                                 <  2:1567165/100‑1 (MQ=255)
                   gACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTgtgg                                                                                >  1:1673528/1‑100 (MQ=255)
                    aCGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAAGAGCACACGTCTGAACtccagt                                                                               >  1:586817/1‑95 (MQ=255)
                     cGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTgtggtg                                                                              <  1:767805/100‑1 (MQ=255)
                      gAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTgtggtg                                                                              <  1:1228074/99‑1 (MQ=255)
                      gAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGtggtgg                                                                             <  2:213162/100‑1 (MQ=255)
                      gAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGtggtgg                                                                             <  2:636582/100‑1 (MQ=255)
                       aaGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGga                                                                            <  1:870445/100‑1 (MQ=255)
                        agagGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGgat                                                                           >  1:1654556/1‑100 (MQ=255)
                           ggTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGgatgat                                                                        >  2:1575271/1‑100 (MQ=255)
                           ggTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGgatgat                                                                        >  1:479902/1‑100 (MQ=255)
                             tCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCt                                                                      <  2:1688213/100‑1 (MQ=255)
                             tCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCt                                                                      <  2:1335096/100‑1 (MQ=255)
                             tCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCt                                                                      >  2:811158/1‑100 (MQ=255)
                             tCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCt                                                                      <  2:297304/100‑1 (MQ=255)
                             tCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCt                                                                      >  1:1004821/1‑100 (MQ=255)
                             tCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCt                                                                      <  2:325446/100‑1 (MQ=255)
                              cAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTg                                                                     <  1:2488540/100‑1 (MQ=255)
                              cAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCATGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTg                                                                     >  2:1628628/1‑100 (MQ=255)
                               aaTGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGa                                                                    <  2:1049/100‑1 (MQ=255)
                                aTGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGat                                                                   <  1:2435184/100‑1 (MQ=255)
                                 tGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGan                                                                   <  2:2617048/99‑2 (MQ=255)
                                  gTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGatat                                                                 >  2:1324156/1‑100 (MQ=255)
                                  gTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGa                                                                    <  1:1979025/97‑1 (MQ=255)
                                    cgacgaTGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCg                                                               >  2:631559/1‑100 (MQ=255)
                                     gacgaTGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCgg                                                              <  2:2175729/100‑1 (MQ=255)
                                     gacgaTGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCgg                                                              <  2:233062/100‑1 (MQ=255)
                                       cgaTGTCGTCACGCTCGTTCACTCGCGCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTc                                                            <  1:874632/100‑1 (MQ=255)
                                           gtcgtcACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCg                                                        <  2:1307352/100‑1 (MQ=255)
                                              gtcACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAAt                                                     <  1:1142892/100‑1 (MQ=255)
                                               tcACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATc                                                    <  1:2754910/100‑1 (MQ=255)
                                               tcACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATc                                                    >  1:542871/1‑100 (MQ=255)
                                                cACTCTCGTTCACTAGCTCCTGAGTTATCATATAAACAGCCTGTTCGGAATGGTACACTTGCGAACTGTGGTGCATTATCTGATATCGGTCACCGAAt                                                     <  2:2646168/98‑1 (MQ=255)
                                                cACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCg                                                   >  2:215449/1‑100 (MQ=255)
                                                cACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCg                                                   <  2:1587317/100‑1 (MQ=255)
                                                  cGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGct                                                 >  1:1162703/1‑100 (MQ=255)
                                                  cGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGct                                                 >  1:913207/1‑100 (MQ=255)
                                                   gCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGctc                                                <  1:52643/100‑1 (MQ=255)
                                                     tCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCtt                                              <  2:2285290/100‑1 (MQ=255)
                                                     tCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCtt                                              <  2:828404/100‑1 (MQ=255)
                                                      cGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTg                                             >  1:723346/1‑100 (MQ=255)
                                                       gTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGc                                            <  2:637818/100‑1 (MQ=255)
                                                           aCTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTc                                        <  1:1608239/100‑1 (MQ=255)
                                                              cGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGc                                     <  1:2218367/100‑1 (MQ=255)
                                                              cGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGc                                     >  1:57477/1‑100 (MQ=255)
                                                                   cTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACgg                                >  2:328424/1‑100 (MQ=255)
                                                                    tGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACggg                               <  1:1619268/100‑1 (MQ=255)
                                                                     gAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGt                              >  2:1890620/1‑100 (MQ=255)
                                                                       gTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGttt                            >  2:302946/1‑100 (MQ=255)
                                                                         tAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTtcg                          >  1:891936/1‑100 (MQ=255)
                                                                         tAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTtcg                          <  1:2293720/100‑1 (MQ=255)
                                                                           acacATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATAGCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTtcgtc                        <  2:1654542/100‑1 (MQ=255)
                                                                            cacaTAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTtcgtcg                       >  2:1096453/1‑100 (MQ=255)
                                                                             acaTAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCgg                      <  1:1069418/100‑1 (MQ=255)
                                                                              caTAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCGGc                     <  1:328428/100‑1 (MQ=255)
                                                                               aTAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCGGCa                    <  1:2363214/100‑1 (MQ=255)
                                                                               aTAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCGGCa                    <  1:794534/100‑1 (MQ=255)
                                                                                   aCAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCGGCAagag                <  1:94718/100‑1 (MQ=255)
                                                                                    cAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCGGCAAGAGc               >  1:393387/1‑100 (MQ=255)
                                                                                      gCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCGGCAAGAGCCa             >  2:2560965/1‑100 (MQ=255)
                                                                                            tCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCGGCAAGAGCCACGGTTg       <  1:178015/100‑1 (MQ=255)
                                                                                              ggAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCGGCAAGAGCCACGGTTGGa     >  2:2955786/1‑100 (MQ=255)
                                                                                               gAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCGGCAAGAGCCACGGTTGGaa    <  1:961448/100‑1 (MQ=255)
                                                                                               gAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCGGCAAGAGCCACGGTTGGaa    >  2:2013780/1‑100 (MQ=255)
                                                                                                 aTGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGTGACGGGTTTCGTCGGCAAGAGCCACGGTTGGaaca  >  2:1503055/1‑100 (MQ=255)
                                                                                                   |                                                                                                 
ACTTGTAAAACTCGTCAATGACGAAGAGGTCAATGTCGACGATGTCGTCACGCTCGTTCACTCGCTCCTGAGTTAACACATAAACAGCCTGATCGGAATGGCACACTTGGGAACTGTGGTGGATGATCTGATATCGGTCACCGAATCGCTCTTGCAGTCGGCGACGGGTTTCGTCGGCAAGAGCCACGGTTGGAACA  >  NC_000913/2762904‑2763100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: