| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 508,648 | C→G | intergenic (+89/+227) | ybaQ → / ← copA | putative DNA‑binding transcriptional regulator/copper transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 508,648 | 0 | C | G | 96.7% | 92.5 / NA | 30 | intergenic (+89/+227) | ybaQ/copA | putative DNA‑binding transcriptional regulator/copper transporter |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base G (14/15); total (15/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAA‑‑CTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCC > NC_000913/508551‑508707 | gTCGCGTAAGGCCAAAACCTCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTAcgcg < 1:2435572/100‑1 (MQ=255)gTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTAcgcg < 2:628567/100‑1 (MQ=255) cgcgTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTc > 1:170748/1‑100 (MQ=255) gcgTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCt < 2:2809547/100‑1 (MQ=255) gcgTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCt > 2:176065/1‑100 (MQ=255) gcgTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCt > 1:177233/1‑100 (MQ=255) gcgTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCt < 1:1638327/100‑1 (MQ=255) gcgGAAGGACAAAACATCGCTGCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCt < 1:148612/100‑1 (MQ=17) cgTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCtt < 2:301361/100‑1 (MQ=255) gTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATGGCCTGATGCGACGCTTACGCGTCTTa < 2:1198497/100‑1 (MQ=255) tAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTAt > 2:2523770/1‑100 (MQ=255) tAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTAt > 1:2187401/1‑100 (MQ=255) aaGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATc < 2:592612/100‑1 (MQ=255) aaGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATc < 1:896587/100‑1 (MQ=255) aGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCa < 2:690271/100‑1 (MQ=255) ggCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAg < 1:1823609/100‑1 (MQ=255) ggCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAg > 2:2879347/1‑100 (MQ=255) gCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAgg < 1:1382610/100‑1 (MQ=255) gCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAgg > 1:1175475/1‑100 (MQ=255) ccAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGc > 2:1003929/1‑100 (MQ=255) cAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGcc < 1:2678650/100‑1 (MQ=255) aaaCATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTa > 1:2117599/1‑100 (MQ=255) aCATCGCTTCAGCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTAc < 1:2650202/99‑1 (MQ=255) aCATCGCTGGATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTAc < 1:974504/99‑1 (MQ=255) cGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACGATTGCCTGGTGCGACGCTTACGCGTCTTATCAGGCCTACaaa > 1:1812147/1‑98 (MQ=255) cGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAA‑‑cc < 1:1285696/100‑2 (MQ=255) cGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAA‑‑cc < 1:2496277/100‑2 (MQ=255) gCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAA‑‑cct > 1:2586952/1‑98 (MQ=255) cATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAA‑‑CCTGTGc > 2:2437076/1‑100 (MQ=2) cATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAA‑‑CCTGTGc > 2:1067725/1‑100 (MQ=9) tcGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCAAGCCCCATTACCTGATGCGACGCTTACCCGTCTCATCAGGCCTACAAC‑‑CCTGTGcc > 2:2672760/1‑97 (MQ=11) catcaggcatctgCGCACGACTGCCGGATGCGACGCTAACGCGTCTTATCAGACCTACAAATTCTCACGCC‑‑ATCCGTAGGCCGGATAAGGCGTTCAcgcc > 1:522051/1‑100 (MQ=14) | GTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAA‑‑CTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCC > NC_000913/508551‑508707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |