| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 508,702 | T→C | intergenic (+143/+173) | ybaQ → / ← copA | putative DNA‑binding transcriptional regulator/copper transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 508,702 | 0 | T | C | 96.0% | 44.9 / ‑4.1 | 25 | intergenic (+143/+173) | ybaQ/copA | putative DNA‑binding transcriptional regulator/copper transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (15/9); minor base A (1/0); total (16/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
CATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAA‑‑CTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGG > NC_000913/508608‑508798 | catcaggcatctgCGCACGACTGCCGGATGCGACGCTAACGCGTCTTATCAGACCTACAAATTCTCACGCC‑‑ATCCGTAGGCCGGATAAGGCGTTCAcgcc > 1:522051/1‑100 (MQ=14) caggtttGTGCC‑GAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCA‑CAATGCCTGATGCGGCGCGAACGC‑‑CTTATCCGGCCTAcg > 1:537006/6‑99 (MQ=11) ttcattttgTAGGCAGAATAAGACGTTCTCGCAGCATCCGGCA‑TCCGTGCACCATTTCCTGATGCGACGCTTACGCGTCTTATCAGCCCTACAATCCtg < 2:2633486/91‑1 (MQ=0) tctcGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCt < 1:474169/97‑1 (MQ=2) tcGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGa > 1:1949835/2‑100 (MQ=17) tcGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGCGCCTGa > 2:2932813/2‑100 (MQ=2) cGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGaa > 1:1412672/1‑100 (MQ=18) gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAAc < 2:558763/100‑1 (MQ=18) gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTAACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAAc > 1:2132695/1‑100 (MQ=12) tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAAcc < 2:1183507/100‑1 (MQ=18) atgCCGGATGCGGCGTGAACGCCTTATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCg > 1:28932/3‑100 (MQ=11) ggCCGGATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGt > 2:146946/1‑100 (MQ=18) atctggATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGt < 2:1485768/96‑1 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTa < 1:1989125/100‑1 (MQ=18) ccGGATAAGGCGTTCACGCCGCATCCGGCA‑TTCGAGCACCATTGCCAGATGCGACGCTTACGCGTCCTACCAGGCCTACAAACCTGTGCCTGAACCGTa > 1:973830/1‑99 (MQ=11) ccGGATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAg > 2:789728/1‑100 (MQ=18) ggATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGTCCTACAAACCTGTGCCTGAACCGTAGGc > 2:2996528/1‑100 (MQ=9) ggATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAgat > 1:1485780/1‑98 (MQ=16) ggATAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGc > 1:3025963/1‑100 (MQ=17) tAAGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCgg < 1:1781705/100‑1 (MQ=18) aGGCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGAt > 1:2680892/1‑100 (MQ=18) gCGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATaa > 2:331977/1‑100 (MQ=25) cGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAg < 2:2187382/100‑1 (MQ=18) cGTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAg > 2:2505033/1‑100 (MQ=25) gTTCACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAgg < 1:1818915/100‑1 (MQ=25) | CATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAA‑‑CTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCA‑TCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGG > NC_000913/508608‑508798 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |