| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 107,553 | (T)9→8 | 100% | intergenic (+79/‑152) | lpxC → / → secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 107,545 | 0 | T | . | 96.2% | 568.0 / 14.5 | 130 | intergenic (+71/‑160) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| Reads supporting (aligned to +/- strand): ref base T (4/1); new base . (67/58); total (71/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 142 total aligned reads displayed.
CAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGAC > NC_000913/107447‑107640 | cAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGtt < 1:2320388/100‑1 (MQ=255) aaaGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGttt > 2:970920/1‑100 (MQ=255) aaGCGCCTTCAGCTGTACTGGTATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGTCACTCTCTCCGGCCAGGTGAACCAGTCGtttt < 2:610148/100‑1 (MQ=255) gcgcCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGtttttt > 1:3003271/1‑100 (MQ=255) gcCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGtttttttt < 2:1747397/100‑1 (MQ=255) ccTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGttttttttg < 1:2177320/100‑2 (MQ=255) ttCAGCTGTACTGGCATAACGACATTAATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCGCCGGCCAGGTGAACCAGTCGttttttttga > 2:353202/1‑97 (MQ=255) cAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAAtt > 2:2798396/1‑100 (MQ=255) agttGTACTGGCATAACGACATTTATATTGTCTTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTTAACCAGTCG‑TTTTTTTTGAAttt < 2:780676/97‑1 (MQ=255) gCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAAtttt < 2:126536/100‑1 (MQ=255) tGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTtat < 2:195321/100‑1 (MQ=255) tGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTtat < 2:296180/100‑1 (MQ=255) gTACTGGCATAACGACATTTATAATGTCGTATAAAATTCGACTGGC‑AAATCTGGCAATCTCTCCGGCTAGGAGAAGCAGTCG‑TTTTTTTTGAATTTtat > 2:666977/1‑99 (MQ=255) tACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATaa > 2:2628258/1‑100 (MQ=255) aCTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAag < 2:2234279/100‑1 (MQ=255) cTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAaga > 1:3115967/1‑100 (MQ=255) cTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAaga > 1:1022370/1‑100 (MQ=255) ggCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGc < 2:687825/100‑1 (MQ=255) ggCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGc < 1:314088/100‑1 (MQ=255) ggCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGc > 2:249325/1‑100 (MQ=255) cttAACGACATTTATACTGTTGTATAAAATTCCACTGGC‑AAATCTAGCACTCTCTGCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCta < 1:2718157/98‑1 (MQ=255) cATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCta > 2:1351253/1‑100 (MQ=255) aTAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCtat > 1:859588/1‑100 (MQ=255) aCGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATaaa > 1:3165725/1‑100 (MQ=255) aCATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATaaaaaa > 2:2294647/1‑100 (MQ=255) cATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAAc > 2:67901/1‑100 (MQ=255) tttATCCGGTCGAATAAAATT‑GGCTGGCAAAATTTGCAATTTTCTCCGGCAAGTGGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACgg < 2:2304657/100‑1 (MQ=255) tttATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACgg < 1:2453482/100‑1 (MQ=255) ttATACTGTCGTATAAAATTCGACTGGC‑AAATATGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACgg > 2:2600267/1‑99 (MQ=255) ataCTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGc < 2:2365049/100‑1 (MQ=255) ataCTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGc < 1:2016324/100‑1 (MQ=255) taCTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCg > 1:2155396/1‑100 (MQ=255) aCTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCTGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAAAACTATAAAAAACGGTGCg < 2:387978/99‑1 (MQ=255) gTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACg < 2:1194339/100‑1 (MQ=255) gTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGTCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTg > 2:1742428/1‑100 (MQ=255) gTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTg > 1:2780583/1‑100 (MQ=255) gTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTg > 1:2624876/1‑100 (MQ=255) tataAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGt < 2:2214887/100‑1 (MQ=255) tataAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGt > 1:2476157/1‑100 (MQ=255) tataAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGt > 1:2564193/1‑100 (MQ=255) ataAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTT‑TATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGtt > 2:2053524/1‑100 (MQ=255) taAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGagatcggaag > 1:2215569/1‑91 (MQ=255) taAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGttt > 2:251501/1‑100 (MQ=255) tctttCGACGGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTc < 1:1009139/97‑1 (MQ=255) aaaTTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGtttt > 2:2761962/1‑99 (MQ=255) aaTTCGACTGGC‑AGATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTc < 2:2758970/99‑1 (MQ=255) aaTTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCt < 1:190890/100‑1 (MQ=255) aaTTCGAAGGGC‑AAATCTGGCACTCTCTCCGACCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTAAAAAAAAAAAAAAAAACGGTGCGAACGCTGTTTTCt < 2:898247/100‑1 (MQ=255) ttCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTcaga > 2:1009134/1‑97 (MQ=255) ttCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTa < 1:1018361/100‑1 (MQ=255) ttCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTa > 1:2999745/1‑100 (MQ=255) ttCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTC‑TTTTTTTTTTAATTTTATAAGAGCTATAAAAAACAGTGCGAACGCTGTTTTCTTa > 1:1133764/1‑100 (MQ=255) tCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTaa < 1:2838164/100‑1 (MQ=255) cGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAg > 2:2706386/1‑100 (MQ=255) gACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGc > 1:786745/1‑100 (MQ=255) gACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAAAAAAAAAAAAAACGGTGCGAACGCTGTTTTCTTAAGc < 2:2439603/100‑1 (MQ=255) aCTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAACa > 1:2071/1‑100 (MQ=255) cTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCAc < 2:209912/100‑1 (MQ=255) cTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCAc > 1:1903952/1‑100 (MQ=255) cTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCAc > 2:1946875/1‑100 (MQ=255) tGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACt < 2:2041760/100‑1 (MQ=255) tGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGAGAACGCTGTTTTCTTAAGCAc > 2:405036/1‑99 (MQ=255) tGGC‑AAATCTGGCACTATCTCCGGCCAGGTGAACCAGTAG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACt < 1:2336027/100‑1 (MQ=255) ggC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACtt > 2:2508977/1‑100 (MQ=255) ggC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACtt > 1:1441667/1‑100 (MQ=255) ggC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACtt > 1:1771685/1‑100 (MQ=255) ggC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACtt > 1:831023/1‑100 (MQ=255) ggC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACtt > 2:2720850/1‑100 (MQ=255) gC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACttt < 2:2389145/100‑1 (MQ=255) c‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATACAAAACGGTGCGAACGCTGTTTTCTTAAGCACtttt > 1:2854147/1‑100 (MQ=255) aaaTCTTGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTc < 1:3027087/100‑1 (MQ=255) aaaTCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACtttt > 1:2523625/1‑99 (MQ=255) aaaTCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTc > 1:712022/1‑100 (MQ=255) aaaTCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTc > 1:2523495/1‑100 (MQ=255) aaTCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTcc > 2:2415718/1‑100 (MQ=255) aaTCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTcc < 2:1110560/100‑1 (MQ=255) tGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGcac < 2:1412580/100‑1 (MQ=255) tGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGcac < 2:1158185/100‑1 (MQ=255) gctctctctCCGGCCAGGTGAACAAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGcac < 1:2756580/95‑1 (MQ=255) gCACTCTCTCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACaa > 1:1417992/1‑100 (MQ=255) ctctctCCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACaagat > 2:2553977/1‑97 (MQ=255) tctcCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCGATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATc > 2:2592487/1‑100 (MQ=255) ctcCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCt > 1:1688217/1‑100 (MQ=255) tcCGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCt > 1:1578775/1‑99 (MQ=255) ccGGCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTc < 2:1130032/100‑1 (MQ=255) ctgCCAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCa < 1:1129184/98‑1 (MQ=255) cAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTc < 2:790260/100‑1 (MQ=255) cAGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCg < 1:733360/100‑1 (MQ=255) aGGTGAACCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGt > 2:2175533/1‑100 (MQ=255) ggTGAACCAGTCGTTTTTTTTT‑TTTTTTTTTAGTGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACACCTTATCTTCATTCGt > 1:1399739/1‑99 (MQ=255) aaCCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCtgt < 2:3048187/100‑1 (MQ=255) aCCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGATCGCTGTTTTCTTAAGCACTTTTCCGCACAACTGATCTTCATTCGTGCtgtn < 2:1548213/100‑2 (MQ=255) aCCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCtgtg < 1:2628279/100‑1 (MQ=255) aCCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCtgtg < 1:3004812/100‑1 (MQ=255) aCCAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCtgtg < 1:740899/100‑1 (MQ=255) ccAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTgg < 1:249327/100‑1 (MQ=255) ccAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTgg < 1:1171326/100‑1 (MQ=255) cAGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTgg > 1:1427004/1‑99 (MQ=255) aGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGAc < 2:2523607/100‑1 (MQ=255) aGTCG‑TTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGAc < 1:2600674/100‑1 (MQ=255) | CAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGC‑AAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTTTTTTTTTGAATTTTATAAGAGCTATAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGAC > NC_000913/107447‑107640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |