BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	2,470,410	(T)_7→6	100%	coding (1280/1332 nt)	gtrS →	serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,470,404	0	T	.	100.0%	553.2 / NA	116	coding (1274/1332 nt)	gtrS	serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (62/54); total (62/54)

Only 100 of 133 total aligned reads displayed.

ATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCT  >  NC_000913/2470306‑2470498

aTTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGtt                                                                                               >  1:2434860/1‑100 (MQ=255)

   ttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttt                                                                                            <  2:2632919/100‑1 (MQ=255)

   ttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttt                                                                                            <  2:2469934/100‑1 (MQ=255)

    tataTGTCATTTTTCAGGGAAGGCTCTAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATTCATAACAGTCGtttgtt                                                                                           <  2:2711350/100‑1 (MQ=255)

    tATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGtttttt                                                                                           <  1:2640637/100‑1 (MQ=255)

    tATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTAGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGtttttt                                                                                           <  2:3022176/100‑1 (MQ=255)

       ttgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaat                                                                                        <  1:503345/99‑4 (MQ=255)

       gtgtCATTTTTTTGGTAATTATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaat                                                                                        >  2:399963/1‑97 (MQ=255)

       gtgtCATTTTTCTGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaat                                                                                        >  2:2801502/1‑97 (MQ=255)

       gtgtCATTTTTCGGTGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTCATACATAACAGTCGttttttaat                                                                                        <  1:2754533/100‑4 (MQ=255)

       gtgtCATTTTTCGGGTAAGGATATATAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaat                                                                                        <  2:1829889/100‑4 (MQ=255)

        tgtCATTTTTCGGGGGAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaatt                                                                                       <  1:3200234/100‑5 (MQ=255)

        tgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATATATAACAGTCGttttttaatt                                                                                       <  2:435654/100‑5 (MQ=255)

        tgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaata                                                                                       >  2:503343/1‑96 (MQ=255)

         gtCATTTTTCGGGGGAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGTCCTTTGCTTATACATAACAGTCGttttttaatt                                                                                       <  1:2629847/99‑5 (MQ=255)

         gtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAAttt                                                                                     <  2:842218/100‑1 (MQ=255)

          tCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTTCTTATACATAACAGTCG‑TTTTTTAATTta                                                                                    >  1:1317964/1‑100 (MQ=255)

            atgtttCGGGTAAGGATATATTGTTTTTAGCAAGCTTTTATTTGGAATGTATTTTTTTTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTtata                                                                                  <  2:1582860/97‑1 (MQ=255)

            aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTtata                                                                                  <  2:3223077/100‑1 (MQ=255)

            aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTtata                                                                                  <  1:80689/100‑1 (MQ=255)

            aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTtata                                                                                  >  1:514954/1‑100 (MQ=255)

            aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTtata                                                                                  <  1:1723532/100‑1 (MQ=255)

              ttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATaaa                                                                                <  1:3244501/100‑1 (MQ=255)

              ttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGATTATACATAACAGTCG‑TTTTTTAATTTATaaa                                                                                <  1:3081635/100‑1 (MQ=255)

               tttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATaaaa                                                                               >  2:1278251/1‑100 (MQ=255)

               tttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATaaaa                                                                               >  2:2051047/1‑100 (MQ=255)

                  cGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAaataa                                                                            >  1:2883283/1‑100 (MQ=255)

                   ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAaataat                                                                           <  2:1367219/100‑1 (MQ=255)

                     ngAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTc                                                                         >  2:1499777/2‑100 (MQ=255)

                     ggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTc                                                                         <  1:1750700/100‑1 (MQ=255)

                     ggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTc                                                                         <  1:2107752/100‑1 (MQ=255)

                      gAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTc                                                                         <  1:432117/99‑1 (MQ=255)

                       aaGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCaa                                                                       <  2:1932431/100‑1 (MQ=255)

                          gATATATAGATTTAAGCAAGTATTTATTTATAATCTATTTTTCGTTCGACCTTTGCATATACATAACAGTCG‑CTTTTTAATTTATAAAATAATTCAAAGa                                                                    <  2:3091625/100‑1 (MQ=255)

                          gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACATTCG‑TTTTTTAATTTATAGAATAATTCaaata                                                                    <  1:2186378/100‑3 (MQ=255)

                           atatAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGaa                                                                   >  1:1588394/1‑100 (MQ=255)

                            tataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGaaa                                                                  >  2:3007148/1‑100 (MQ=255)

                              taGAGATTTAAGCAAGCATTTATTTGGATTGTATTTTTGGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATTAAATAATTCAAAGAAAt                                                                 >  2:421150/1‑99 (MQ=255)

                              taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATc                                                                >  1:1489677/1‑100 (MQ=255)

                              taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATc                                                                <  2:291221/100‑1 (MQ=255)

                              taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATc                                                                >  1:88108/1‑100 (MQ=255)

                               agagATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTAAAAGAAATCa                                                               >  2:750765/1‑100 (MQ=255)

                                gagaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCaa                                                              >  2:77468/1‑100 (MQ=255)

                                  gacttAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGAACTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGa                                                            <  2:781813/97‑1 (MQ=255)

                                  gaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGa                                                            >  1:2465672/1‑100 (MQ=255)

                                  gaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGa                                                            >  1:2780273/1‑100 (MQ=255)

                                   aTTTAAGCAATCATTTATTTGGAATGTATTTTTTGTTAGATATTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGa                                                            <  2:781483/99‑1 (MQ=255)

                                   aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCTTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAc                                                           <  2:3078950/100‑1 (MQ=255)

                                   aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAc                                                           <  2:2260863/100‑1 (MQ=255)

                                   aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAc                                                           <  2:1660007/100‑1 (MQ=255)

                                    tttAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACa                                                          <  2:584608/100‑1 (MQ=255)

                                     ttAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACaa                                                         >  2:176211/1‑100 (MQ=255)

                                          caagcaTTTATTTGGAATGTATTTTTTTTTTTATCTTTTCTTATACATAACAGTCG‑TGTTGTAATTTATAAAATAATTCAAAGAAATCAAGACAATa                                                       >  2:2276577/1‑97 (MQ=255)

                                          caagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCg                                                    <  1:1420024/100‑1 (MQ=255)

                                             gcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATg                                                 <  2:2201692/100‑1 (MQ=255)

                                             gcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATg                                                 <  2:514952/100‑1 (MQ=255)

                                             gcaTTTATTTGGAATGTATTTTTCGTGCTACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGa                                                   <  2:682900/98‑1 (MQ=255)

                                              caTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGt                                                >  2:2129881/1‑100 (MQ=255)

                                                  tatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTaaa                                             >  1:809434/1‑99 (MQ=255)

                                                   atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                           <  1:2777546/100‑1 (MQ=255)

                                                   atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                           <  1:2950079/100‑1 (MQ=255)

                                                   atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                           <  2:2850318/100‑1 (MQ=255)

                                                     ttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCAc                                         <  1:2090743/100‑1 (MQ=255)

                                                     ttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCAc                                         >  2:1648319/1‑100 (MQ=255)

                                                       ggAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTa                                       >  2:2107138/1‑100 (MQ=255)

                                                         aaTGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTAG‑TTTTTTAATTTATAAAATAATTAAAAGAAATCAAGACAATAGCGATGTAAACCACTaa                                      >  2:1094575/1‑99 (MQ=255)

                                                           tGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGtt                                   <  2:75815/100‑1 (MQ=255)

                                                             tATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTa                                 >  1:24763/1‑100 (MQ=255)

                                                                ttttCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAt                              >  1:2383230/1‑100 (MQ=255)

                                                                ttttCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAt                              >  2:1282449/1‑100 (MQ=255)

                                                                ttttCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAt                              >  1:2144569/1‑100 (MQ=255)

                                                                    cgttcgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgc                           >  2:2840180/1‑99 (MQ=255)

                                                                     gttcgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgc                         >  1:1201841/1‑100 (MQ=255)

                                                                      ttcgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgcg                        <  2:88106/100‑1 (MQ=255)

                                                                       tcgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgcgc                       <  2:1152705/100‑1 (MQ=255)

                                                                       tcgACCTGTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAGTAGCGATGTAAAGCACTAAGTTTAAATTgcgcgc                       >  2:1706620/1‑100 (MQ=255)

                                                                        cgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgcgc                       >  1:73129/1‑99 (MQ=255)

                                                                         gACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCa                     >  1:1989055/1‑100 (MQ=255)

                                                                         gACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCa                     <  1:3042233/100‑1 (MQ=255)

                                                                         gACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCACGCCa                     >  2:2449925/1‑100 (MQ=255)

                                                                           ccTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCaa                    >  1:1354127/1‑99 (MQ=255)

                                                                             tttGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCAATGTAAAGCACTAAGTTTAAATTGCTCTCCAAt                   >  2:2049026/1‑98 (MQ=255)

                                                                              ttGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCatgatt                <  1:1466933/100‑6 (MQ=255)

                                                                               tGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATg               >  2:824795/1‑100 (MQ=255)

                                                                                gCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATgg              >  1:3188490/1‑100 (MQ=255)

                                                                                gCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATgg              >  1:3082496/1‑100 (MQ=255)

                                                                                gCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATgg              <  2:2383214/100‑1 (MQ=255)

                                                                                 cTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATgg              >  1:2658482/1‑99 (MQ=255)

                                                                                 cTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgc             <  1:2857812/100‑1 (MQ=255)

                                                                                 cTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgc             >  2:2830039/1‑100 (MQ=255)

                                                                                     taCATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgcgcgc         >  2:2023519/1‑100 (MQ=255)

                                                                                      aCATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGca        >  1:1431183/1‑100 (MQ=255)

                                                                                       cATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcac       >  1:2408936/1‑100 (MQ=255)

                                                                                        aTAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGTACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcaca      <  2:1741461/100‑1 (MQ=255)

                                                                                         tAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACaa     >  1:1026740/1‑100 (MQ=255)

                                                                                          aaCAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAg    >  2:2677908/1‑100 (MQ=255)

                                                                                           aCAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGc   <  2:2780249/100‑1 (MQ=255)

                                                                                           aCAGTCG‑TTTTTTAATTTATAAAATAAGTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAATTTGCGCGCCAATCATGGCGCGCACAAGc   <  2:262797/100‑1 (MQ=255)

                                                                                            cAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCt  >  1:131686/1‑100 (MQ=255)

                                                                                            cAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATACCGATGTAAAACACTAAGATTAAATTGCACGCCAATCAAGACGCGCACAAg    >  2:2458686/1‑98 (MQ=255)

ATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCT  >  NC_000913/2470306‑2470498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`