| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,866,592:1 | +C | 100% | coding (960/993 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,866,588 | 1 | . | C | 97.8% | 476.1 / 3.1 | 135 | coding (964/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base C (63/68); total (65/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 149 total aligned reads displayed.
CATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑G‑CCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCTACA > NC_000913/2866489‑2866682 | cATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑g < 1:1407587/100‑1 (MQ=255) tCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑G‑cc < 2:3212092/100‑1 (MQ=255) cGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGTCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑G‑cc > 2:1387916/1‑99 (MQ=255) cGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑G‑ccc > 2:1953376/1‑100 (MQ=255) ggACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑G‑ccc‑c > 2:1530766/1‑100 (MQ=255) gACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑G‑ccc‑cc > 1:1150736/1‑99 (MQ=255) gACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑G‑ccc‑cc > 1:2772784/1‑99 (MQ=255) cTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑G‑ccc‑cctgc > 1:2271530/1‑96 (MQ=255) ttATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGtt < 2:1642606/100‑1 (MQ=255) tATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGttt > 1:581959/1‑100 (MQ=255) aTTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTg > 2:48037/1‑100 (MQ=255) tgtgCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCa > 1:2938420/1‑100 (MQ=255) gtgCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAg < 2:1300863/100‑1 (MQ=255) tgCACAGAAAAAACAAGCCTCGCTTGAGACCGGCCTTTCTGACAGACGATTAATTACTCACGAAAAAGCGCAACAATAATCA‑GCCCC‑CTGCGTTTGCAgg > 2:1760746/1‑100 (MQ=255) gCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAgg > 1:795547/1‑99 (MQ=255) gCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGa > 2:2118269/1‑100 (MQ=255) gCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGa > 2:3182890/1‑100 (MQ=255) cacaGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCATC‑CCC‑CTGCGTTTGCAgg > 1:474746/1‑98 (MQ=255) cacaGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGAt < 1:2884204/100‑1 (MQ=255) cacaGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGAt < 2:585636/100‑1 (MQ=255) caGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGAttt > 1:684129/1‑100 (MQ=255) caGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGAAtt > 1:942389/1‑99 (MQ=255) aaaGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTcgcg < 2:595572/100‑1 (MQ=255) ccAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAAc > 2:1173760/1‑100 (MQ=255) ccAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAAc < 1:260907/100‑1 (MQ=255) aGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACgg > 2:52733/1‑100 (MQ=255) ccTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGgcg > 2:2541840/1‑100 (MQ=255) cTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCATACGgcgc < 1:1709558/100‑1 (MQ=255) cTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGgcgc < 1:1147376/100‑1 (MQ=255) tCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCa < 1:2090331/100‑1 (MQ=255) gCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAgg < 1:1956453/100‑1 (MQ=255) cTTGAGACTGGCCTTTCTTACATACGCTTACTTTCTCGCGGAACTGCGCTTCGATATTCA‑G‑CCCTCTGCGTTTGCATGATTTCGCCCAAACGGCGCAgg < 2:2009089/99‑1 (MQ=255) tGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAggaga > 2:1348025/1‑97 (MQ=255) tGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCt > 2:3108667/1‑100 (MQ=255) gagaCTGTCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCtt < 1:2606636/100‑1 (MQ=255) agaCTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCTCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTc < 2:2071259/100‑1 (MQ=255) gaCTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGACTTCa < 2:1388033/100‑1 (MQ=255) tGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAAcc < 1:2392795/100‑1 (MQ=255) gCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTg < 2:1586329/100‑1 (MQ=255) gCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTg > 2:116092/1‑100 (MQ=255) gCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTg < 1:1797585/100‑1 (MQ=255) ccTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGa > 1:2458749/1‑100 (MQ=255) ttCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc < 2:774228/100‑1 (MQ=255) cTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTg < 1:1749815/100‑1 (MQ=255) tGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTgg < 1:2452089/100‑1 (MQ=255) gACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGc > 1:2696880/1‑100 (MQ=255) gACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGc < 1:1270810/100‑1 (MQ=255) gACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGc < 1:2386733/100‑1 (MQ=255) gACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGc < 1:3108695/100‑1 (MQ=255) aCAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCg < 1:669462/100‑1 (MQ=255) aCAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCg < 2:1171324/100‑1 (MQ=255) aCAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCg < 1:3198849/100‑1 (MQ=255) tGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAacac > 1:839877/1‑100 (MQ=255) tGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAacac < 1:2337618/100‑1 (MQ=255) tGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAacac > 2:2355690/1‑100 (MQ=255) cttacttaCTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACg < 2:698096/99‑1 (MQ=255) cttacttaCTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGt > 2:3055925/1‑100 (MQ=255) cttacttaCTCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGt < 2:148657/100‑1 (MQ=255) tacttactCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTc < 2:280933/100‑1 (MQ=255) tacttactCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTc < 1:1387924/100‑1 (MQ=255) ncttactCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCa > 1:1221993/2‑100 (MQ=255) tactCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACgg > 1:2647044/1‑100 (MQ=255) tactCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACgg < 2:2591539/100‑1 (MQ=255) tactCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACgg > 2:2423478/1‑100 (MQ=255) tactCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACgg > 1:1384627/1‑100 (MQ=255) tactCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACgg < 2:1577409/100‑1 (MQ=255) ctCGCGGAACAGCGGTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAACCTGGCGCACACGTTCACGGGt > 2:882418/1‑100 (MQ=255) ctCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGt > 1:437886/1‑100 (MQ=255) ctCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGt > 1:1673750/1‑100 (MQ=255) ctCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGt > 2:34055/1‑100 (MQ=255) tCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTg < 1:2118284/100‑1 (MQ=255) tCGCGGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTg > 1:142879/1‑100 (MQ=255) cgcgGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGa > 1:1318594/1‑100 (MQ=255) cgcgGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGa > 1:505343/1‑100 (MQ=255) gcgGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAg < 1:806741/100‑1 (MQ=255) gcgGAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAg > 1:386005/1‑100 (MQ=255) gAACAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGcc > 2:1698371/1‑100 (MQ=255) aCAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACATTCAAGAAAGAGGCCaa > 1:810399/1‑100 (MQ=255) cAGCGCTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAt < 1:1398494/100‑1 (MQ=255) gcgcTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt > 2:865723/1‑100 (MQ=255) gcgcTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt < 2:2345642/100‑1 (MQ=255) gcgcTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt > 2:1819831/1‑100 (MQ=255) gcTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCa < 1:34055/100‑1 (MQ=255) gcTTAGATATTCA‑GTCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCATCCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCa < 2:2856552/100‑1 (MQ=255) cTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCAc < 1:1157700/100‑1 (MQ=255) cTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCAc < 2:505341/100‑1 (MQ=255) cTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCAc < 1:1602686/100‑1 (MQ=255) cTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCAc < 1:1173766/100‑1 (MQ=255) cTTCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCAc < 1:2647917/100‑1 (MQ=255) ttCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACg < 1:1953388/100‑1 (MQ=255) ttCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACg < 1:533563/100‑1 (MQ=255) tCGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCAcag > 2:1157694/1‑98 (MQ=255) cGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGAc > 1:1507613/1‑100 (MQ=255) cGATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGAc < 2:2746511/100‑1 (MQ=255) gATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGa < 2:1063179/98‑1 (MQ=255) gATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGAcc > 2:3138502/1‑100 (MQ=255) gATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGAcc < 1:411900/100‑1 (MQ=255) gATATTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCAAATATCACGAcc > 1:836627/1‑100 (MQ=255) atatTCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCt > 1:176785/1‑100 (MQ=255) ttCA‑GCCCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCTACa < 2:2973700/100‑1 (MQ=255) | CATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCA‑G‑CCC‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCTACA > NC_000913/2866489‑2866682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |