| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,296,381:1 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,380 | 1 | . | C | 98.1% | 163.3 / ‑3.3 | 52 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (28/23); total (28/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 4,296,380 | 2 | . | G | 98.1% | 165.0 / ‑3.0 | 52 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (28/23); total (28/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
TGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTA‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACC > NC_000913/4296343‑4296470 || tGATTTAGCGTTATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAc < 2:1315954/100‑1 (MQ=11) aTTTAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCg > 1:2300249/1‑100 (MQ=255) tttAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGt > 1:2157092/1‑100 (MQ=255) tttAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGt > 1:1950684/1‑100 (MQ=255) ttAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGtt < 1:2317944/100‑1 (MQ=255) tAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg > 1:2976540/1‑100 (MQ=255) atcGTGATTTTGTCGGTCGGATAGGGCGTCCGCT‑‑CCGCACCCGGTATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTgg < 2:3041486/98‑1 (MQ=14) aGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTgg > 2:2327658/1‑100 (MQ=255) aGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTgg < 1:2397067/100‑1 (MQ=255) aGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑GTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTgg < 2:3185530/100‑1 (MQ=11) gCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGt > 2:2866288/1‑100 (MQ=255) gCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTCGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGt > 2:1715013/1‑100 (MQ=14) cGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGtt < 2:933655/100‑1 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTa < 1:920140/100‑1 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGCTGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGTTTa > 1:2666195/1‑99 (MQ=11) gATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAt > 2:269916/1‑100 (MQ=255) aTTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtt > 2:2372961/1‑100 (MQ=255) aTTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtt > 1:849419/1‑100 (MQ=255) aTTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtt < 2:773796/100‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACAGTTGGTTAAtt > 1:1562672/1‑100 (MQ=14) ttttGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAttt > 1:1749093/1‑100 (MQ=255) ttttGTAGGTCGGATAAGGCGT‑‑GTACGCCGCATCCGACATCAATGCCTGATGCGACACTTGCCGCGTCTTATCAGGCCTATCTTAACCAACGGTTaagat < 1:599619/100‑4 (MQ=11) tttGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtttt < 2:2415250/100‑1 (MQ=255) ttGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAttttt > 2:737491/1‑100 (MQ=255) ttGGAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTAGGTTAAttttt < 2:599396/100‑1 (MQ=14) tGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc < 1:1520633/100‑1 (MQ=255) tGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc > 1:3240673/1‑100 (MQ=255) gTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCa > 1:916016/1‑100 (MQ=255) tatgTCTGATAAGGCTT‑‑TTACGCCGCATCCTATATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCa < 1:618775/96‑1 (MQ=17) tAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa < 1:862545/100‑1 (MQ=255) tAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa < 1:1671191/100‑1 (MQ=255) aGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa > 1:1060822/1‑100 (MQ=255) aGGTCGGATAAGGCGT‑‑TTACGCCGCACCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa < 1:600345/99‑1 (MQ=17) ggTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc > 1:1606710/1‑100 (MQ=255) ggTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc < 1:321099/100‑1 (MQ=255) ggTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc > 2:2773873/1‑100 (MQ=255) ggTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc > 1:2822452/1‑100 (MQ=255) gTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAATct > 1:248155/1‑100 (MQ=17) gTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAct > 1:743143/1‑100 (MQ=255) gTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAct > 1:3095855/1‑100 (MQ=255) tCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActc > 1:1959682/1‑100 (MQ=255) cGGATAAGGCGT‑‑TTACGCCGCATCTTACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActct < 2:1882653/100‑1 (MQ=18) cGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActct > 1:450879/1‑100 (MQ=255) ggATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCtt < 2:672388/100‑1 (MQ=255) gATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc < 1:1395749/100‑1 (MQ=255) gATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc < 2:890409/100‑1 (MQ=255) gATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc > 2:1547015/1‑100 (MQ=255) tAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTcac < 2:223354/100‑1 (MQ=255) tAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTcac < 2:1365902/100‑1 (MQ=255) aGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCacac > 2:634517/1‑100 (MQ=255) ggCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc > 2:2577242/1‑100 (MQ=255) ggCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc < 2:1290900/100‑1 (MQ=255) || TGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTA‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACC > NC_000913/4296343‑4296470 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |