| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4132351 = | NA (NA) | 6 (0.050) | 4/162 | NT | NA | noncoding (5/34 nt) | REP306 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP306 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4132381 = | NA (NA) | intergenic (+114/‑235) | metL/metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase | |||||
GTAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4132455‑4132351‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatccggcAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCTTC > NC_000913/4132381‑4132478 GTAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAAT < 1:1547359/100‑1GTAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAAT < 1:15585/100‑1 TAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATC > 1:550958/1‑100 TAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATC > 1:486310/1‑100 TAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATC > 1:112213/1‑100 AAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCC > 1:451767/1‑100 AGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCG > 2:789656/1‑100 GAAAAAGAAACTCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCCTCATGCCGGATTCGTCGTAAACGCTTAATCCGG < 2:2130465/100‑1 GAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGG < 1:731378/100‑1 GAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGG < 2:2877011/100‑1 GAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGG < 1:480381/100‑1 AAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGC < 2:1809661/100‑1 AAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGC > 2:1015289/1‑100 CATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTT > 1:179884/1‑99 TGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATT > 1:3254640/1‑100 TTGCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTT > 1:2429675/1‑100 TTGCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTT > 2:3001716/1‑100 TTGCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTT > 2:3110586/1‑100 TGCCGGATTCGTCGTAAACGCTTAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTT > 1:300126/1‑100 AATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTT < 1:866519/99‑1 ATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCA > 2:2527032/1‑100 ATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCA < 1:1572478/100‑1 CCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATC > 1:2778589/1‑100 CGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCT > 1:47018/1‑100 CGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCT < 1:486156/100‑1 CGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCT > 1:1944150/1‑100 CGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCT < 1:1718734/100‑1 CGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCAT > 1:139954/1‑98 GGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCTT > 1:116952/1‑100 CAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGCTTTTCTTTTTCTTACCCTAATGCAGTTTTTTAATCTTC > 1:1891595/1‑99 GTAAGAAAAAGAAAATCCGGTATGCAAAGCAAACCGGACTGCAAATATAAACTAACCATGTACTTATTGCTTCTTGCCGGATTCGTCGTAAACGCTTAATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4132455‑4132351‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatccggcAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACCATCCTGAAGTTTTTTCATCTTC > NC_000913/4132381‑4132478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |