| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1011918 = | NA (NA) | 4 (0.040) | 3/162 | NT | NA | intergenic (+47/‑83) | uup/pqiA | replication regulatory ABC‑F family DNA‑binding ATPase/paraquat‑inducible, SoxRS‑regulated inner membrane protein |
| ? | NC_000913 | 1011945 = | NA (NA) | noncoding (27/29 nt) | REP87 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP87 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
CGCGGCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1012024‑1011918‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcaTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTC > NC_000913/1011945‑1012041 CGCGGCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCA > 1:1618281/1‑100 CGGCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATC < 2:2671428/100‑1 CGGCATGATGATGTTCGCACATAGGTACTCCTTAAAGATGCGCTATTTTACAGATGACTAACAAAGTGTTCGTCTTCATGCCTGATAAACCCAGTTCAac > 2:158057/1‑98 GGCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCA > 2:2255423/1‑100 GCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCAG > 1:1659412/1‑100 GCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCAG > 1:2091131/1‑100 GCATGATGATGTTCGCACATTGGTACTACTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCA < 2:1907688/99‑1 CATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCAGG > 2:141426/1‑100 ATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTGCAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCAGGC < 2:1210957/100‑1 GATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATGAACTGGGTTTATCAGGCAT < 2:1400466/100‑1 TTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATGAACTGGGTTTATCAGGCATGAAAACC < 1:2318412/100‑1 TTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATGAACTGGGTTTATCAGGCATGAAAACC < 1:2318340/100‑1 TTCATGCCTGATAAACCCAGTTCATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCACATCATTAAGGAGTACCAATGTGCGAACATC > 2:640125/1‑100 ATGCCTGATAAACCCAGTTCATCAGGCATCAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCAT > 1:606540/1‑99 CAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTG > 2:625002/1‑100 CAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTG > 2:1648239/1‑100 AGGCATGAAAACCAACACTTTGTTAGTCATCTGTTAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGC < 2:1714404/100‑1 AGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATTTCGCGAAGCACATCCTGTGn < 2:690666/100‑2 AGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGC < 2:1903555/100‑1 AGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGC < 1:2133250/100‑1 AGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGC < 1:434570/100‑1 GGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCT > 1:1810961/1‑100 GGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCT > 2:3144116/1‑100 GGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCT > 1:1003669/1‑100 GGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCT > 1:710812/1‑100 GGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGACGCTAAGCACATCCTG > 1:2599198/1‑96 ATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTC > 2:388431/1‑98 CGCGGCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1012024‑1011918‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcaTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTC > NC_000913/1011945‑1012041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |