New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2139702 =	NA (NA)	9 (0.080)	7/164	NT	NA	noncoding (1/37 nt)	REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	2139735 =	NA (NA)					noncoding (34/37 nt)	REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences

AGATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2139807‑2139702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAG  >  NC_000913/2139735‑2139833                                                                                                                                                                                                               AGATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCA                                                                                                           >  2:615506/1‑100     TCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAG                                                                                                       <  2:1048460/100‑1     TCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAG                                                                                                       <  2:3068076/100‑1      CCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGG                                                                                                      <  1:2822314/100‑1      CCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGG                                                                                                      <  1:3044530/100‑1                                                                     TGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTCACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCAT                                       >  1:594673/1‑100                                                                        AGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTAC                                    >  1:762385/1‑100                                                                        AGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTAC                                    >  2:2803529/1‑100                                                                          GCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGG                                  >  1:1565721/1‑100                                                                          GCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGG                                  >  2:2924767/1‑100                                                                           CCTGATAAGACGCGTAAAGAGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGG                                 >  2:749012/1‑100                                                                             TGATAAGACGCGTAAAGCGTCGCATCAGGCGTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAA                               >  2:3106259/1‑100                                                                                  AGACGCGTAAAGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTT                          >  1:8335/1‑100                                                                                             GCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGG               <  1:2924792/100‑1                                                                                                    ATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTC        >  1:1695106/1‑100                                                                                                     TCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCA       <  1:2944307/100‑1                                                                                                      CAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCAT      <  2:2182071/100‑1                                                                                                      CAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCAT      >  2:1386958/1‑100                                                                                                      CAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCACTCGGCCCAGTCAT      >  2:1269326/1‑100                                                                                                       AGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATT     >  2:1139192/1‑100                                                                                                        GGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTC    <  2:1321049/100‑1                                                                                                         GCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCA   >  2:314210/1‑100                                                                                                         GCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCA   <  1:2577140/100‑1                                                                                                          CCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAG  >  2:2833620/1‑100                                                                                                                                                                                                               AGATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2139807‑2139702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAG  >  NC_000913/2139735‑2139833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.