| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2146653 | NA (NA) | 7 (0.060) | 7/164 | NT | NA | noncoding (54/84 nt) | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2146683 | NA (NA) | noncoding (84/84 nt) | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2146555‑2146653‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGTT < NC_000913/2146683‑2146578 TGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGG > 2:189000/1‑100TGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGG < 2:1425555/100‑1 GAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGC > 1:2722439/1‑100 AATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCC < 2:3016842/100‑1 ATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCG > 2:841404/1‑100 ATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCG < 2:3253807/100‑1 ATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCG < 2:2880579/100‑1 TAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGG > 2:1626974/1‑100 AGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGA > 1:2506771/1‑100 AGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGA < 2:2726777/100‑1 GTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATTCCTACAAATCGCTCATTCCCCAGGCCGGAT < 2:2134771/100‑1 GTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGAT < 1:1847095/100‑1 GTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGAT < 1:1857066/100‑1 GTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGAT < 1:3071811/100‑1 GCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGC > 2:212637/1‑100 GCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCC < 1:3160194/100‑1 GTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCCTG < 1:779748/100‑1 TGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGG < 2:2469669/100‑1 TCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCG < 2:2511776/100‑1 CGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGA < 1:26515/100‑1 ATTCCCCAGGCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGG < 1:212639/100‑1 ggttGCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCA < 1:975502/96‑1 CCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCT > 2:20990/1‑100 CGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTC < 2:1174502/100‑1 GATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAG < 2:743979/100‑1 ATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGT < 2:2955379/100‑1 TGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGTT < 1:2942787/100‑1 TGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGTT > 1:672447/1‑100 TGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGTT < 1:424653/100‑1 TGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGTT > 2:2960670/1‑100 TGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGTT < 1:3187212/100‑1 TGAATAGTAGTTATTTCGCGATTAACTGAGGCGTGCTTCCCCATCGCCTGATGCGACGCTAACGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2146555‑2146653‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGTGCGAGCGCCTTATCCGGCCTGGGGAATGAGCGATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCGATGGGGAAGCACGCCTCAGTT < NC_000913/2146683‑2146578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |