New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2794135	NA (NA)	6 (0.050)	5/168	NT	NA	noncoding (108/136 nt)	REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913	= 2794163	NA (NA)					noncoding (136/136 nt)	REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences

GACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2794037‑2794135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGT  <  NC_000913/2794163‑2794061                                                                                                                                                                                                            GACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGG                                                                                                        <  1:936752/100‑1   CGCTGCGCGTCTTGTCCGGTCTACGTGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCC                                                                                                      <  1:105/100‑1    GCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCG                                                                                                     <  2:361641/100‑1     CTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG                                                                                                    <  1:1942211/100‑1     CTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG                                                                                                    <  1:2472831/100‑1     CTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG                                                                                                    >  2:3092489/1‑100      TGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCTGACAATCTGTTCGTGAACAGGAAGAAATTTATGTTGGCCGtg                                                                                                   <  1:2189507/100‑3                            GGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGC                                                                             <  1:1820488/100‑1                            GGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGC                                                                             <  1:1897514/100‑1                             GGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAAGCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCC                                                                            <  2:1733428/100‑1                                TCCAGGTCGGATAAGGCGTTTACGCCGAATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC                                                                         <  1:1000124/100‑1                                   AGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATA                                                                      <  2:1393307/100‑1                                             AGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCC                                                            <  1:3130716/100‑1                                                                                                    GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCC     >  2:1170259/1‑100                                                                                                    GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCC     <  2:1258017/100‑1                                                                                                    GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCC     <  1:237170/100‑1                                                                                                     CCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCC    >  2:1685151/1‑100                                                                                                     CCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCC    >  2:2318833/1‑100                                                                                                     CCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCC    <  1:457917/100‑1                                                                                                      CGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCG   >  2:1298105/1‑100                                                                                                       GGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGT  >  2:2481445/1‑100                                                                                                       GGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGT  >  2:718333/1‑100                                                                                                        GAGGGCGGCGGCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCG   <  2:3180739/98‑1                                                                                                                                                                                                            GACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2794037‑2794135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGT  <  NC_000913/2794163‑2794061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.