| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2888333 | NA (NA) | 4 (0.040) | 3/164 | NT | NA | intergenic (‑21/+54) | cysH/cysI | phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent/sulfite reductase, beta subunit, NAD(P)‑binding, heme‑binding |
| ? | NC_000913 | = 2888366 | NA (NA) | noncoding (33/37 nt) | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GGCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2888235‑2888333‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCGCA < NC_000913/2888366‑2888261 GGCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTG < 1:474318/100‑1GGCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCGTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTG < 2:532952/100‑1 CGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTCGATCGAGTTTGAACATAGATTCCTCACTGCTTGCCTTGCC > 1:2259834/1‑100 CGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCC < 1:1077461/100‑1 CGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCC < 1:2924358/100‑1 CGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCC < 1:2074376/100‑1 GTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCT < 1:97181/100‑1 TTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTn < 2:2089088/100‑2 TTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTG < 2:1015303/100‑1 TAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGA < 1:1602482/100‑1 TAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGA > 1:2787070/1‑100 CCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATAATAACGCGTGAGCGTCGCATCAGGCAAG < 2:1557689/100‑1 CCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAG < 1:2511037/100‑1 CTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGG < 1:237827/100‑1 TTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGC < 1:2812151/100‑1 tccgatctTAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGT < 1:1203744/92‑1 GCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAG > 1:1826779/1‑100 CCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGA > 2:3209883/1‑100 CTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGAT > 1:1708926/1‑100 TGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATC > 2:1899670/1‑100 TGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATC > 2:2567952/1‑100 TGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATC > 2:2787046/1‑100 GATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTtatccc < 2:1012399/100‑7 GATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTCGATCG > 1:1422540/1‑100 GATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCG < 2:1791923/100‑1 TAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCGga > 2:1203738/1‑98 TAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCGCA > 2:2994558/1‑100 GGCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2888235‑2888333‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGAACGCGTGAGCGTCGCATCAGGCAAGGCAAACAGTGAGGAATCTATGTCCAAACTCGATCTAAACGCCCTGAACGAACTGCCGAAGGTAGATCGCA < NC_000913/2888366‑2888261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |