New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4633091 =NA (NA)10 (0.090) 10/162 NT 7.9% noncoding (1/140 nt) REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913 4633169 = 121 (1.070)noncoding (79/140 nt) REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Frequency below cutoff threshold.

Only 100 of 174 total aligned reads displayed.

GCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATAT  >  NC_000913/4632992‑4633189
                                                                                                   |                                                                                                  
gCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTTCTGAAAAGCGATTGATTTTg                                                                                                    <  2:1434135/100‑1 (MQ=255)
gCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTg                                                                                                    <  2:303628/100‑1 (MQ=255)
 cATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGt                                                                                                   >  2:1620047/1‑100 (MQ=255)
 cATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGt                                                                                                   >  2:2361091/1‑100 (MQ=255)
   cgttgagtccgtttcataatgccgtgtattaagcgcctgatgcgacgctgccgcgtcttatcatgcctaccaaacatattgaaattacgggtatttGTa                                                                                                  >  2:2454990‑M1/97‑99 (MQ=255)
   cgctgagtccgtttcataatgccgtgtattaagcgcctgatgcgacgctgccgcgtcttatcatgcctaccaaacatattgaaattacgggtatttGTAg                                                                                                 >  1:1861007‑M1/97‑100 (MQ=255)
    gctgagtccgtttcataatgccgtgtattaagcgcctgatgcgacgctgccgcgtcttatcatgcctaccaaacatattgaaattacgggtatttGTAgg                                                                                                >  2:1527410‑M1/96‑100 (MQ=255)
    gctgagtccgtttcataatgccgtgtattaagcgcctgatgcgacgctgccgcgtcttatcatgcctaccaaacatattgaaattacgggtatttGTAgg                                                                                                >  2:1927769‑M1/96‑100 (MQ=255)
    cgcgACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAgg                                                                                                >  1:2433369/1‑100 (MQ=255)
     gcgACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGc                                                                                               >  1:1157767/1‑100 (MQ=255)
     gcgACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGc                                                                                               >  2:3128245/1‑100 (MQ=255)
     gcgACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGc                                                                                               <  2:495420/100‑1 (MQ=255)
     ctgagtccgtttcataatgccgtgtattaagcgcctgatgcgacgctgccgcgtcttatcatgcctaccaaacatattgaaattacgggtatttGTAgg                                                                                                >  2:1387699‑M1/95‑99 (MQ=255)
        acgaTTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTg                                                                                            <  2:118408/100‑1 (MQ=255)
         cgaTTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGa                                                                                           >  2:2760443/1‑100 (MQ=255)
            ttACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATaa                                                                                        <  2:1675783/100‑1 (MQ=255)
            ttACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATaa                                                                                        >  1:2799363/1‑100 (MQ=255)
             tACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATa                                                                                         <  1:673700/98‑1 (MQ=255)
              aCGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGa                                                                                      >  2:1211331/1‑100 (MQ=255)
               cgcgTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGCTAAGa                                                                                      >  2:2177135/1‑99 (MQ=255)
               cgcgTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGAc                                                                                     >  2:504214/1‑100 (MQ=255)
               cgcgTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGAc                                                                                     <  2:1235390/100‑1 (MQ=255)
                 cgTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGt                                                                                   >  1:1491622/1‑100 (MQ=255)
                 cgTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGt                                                                                   >  2:679121/1‑100 (MQ=255)
                  gTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGAtgcgccacg                                                                                  >  1:3029914/1‑92 (MQ=255)
                   tGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTgg                                                                                 <  2:2419351/100‑1 (MQ=255)
                          aaCAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCa                                                                          >  2:1145581/1‑100 (MQ=255)
                          aaCAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCa                                                                          >  1:3079885/1‑100 (MQ=255)
                            gtattaagcgcctgatgcgacgctgccgcgtcttatcatgcctaccaaacatattgaaattacgggtatttGTAGGCCTGATAAGACGTGGCGCATCAgg                                                                        <  1:1993014‑M1/29‑1 (MQ=255)
                            cAGCCTGAAAGCCGCGCCCGTCGAGATGCGACAGCGGCCAGAACAGCTGTTGCTCCAAAGCGCTTGATATTGTAGACCTGATaaaccgcgg                                                                                 >  2:1512620/1‑84 (MQ=255)
                               ccTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCAt                                                                     >  2:2687930/1‑100 (MQ=255)
                                cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATc                                                                    >  1:397724/1‑100 (MQ=255)
                                 tGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAggagatc                                                                   >  1:1662659/1‑95 (MQ=255)
                                 tGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCg                                                                   >  1:339548/1‑100 (MQ=255)
                                 tGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCg                                                                   >  2:337399/1‑100 (MQ=255)
                                 tGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCg                                                                   <  2:3160642/100‑1 (MQ=255)
                                 tGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCg                                                                   <  2:2855383/100‑1 (MQ=255)
                                     aGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCa                                                               >  2:734958/1‑100 (MQ=255)
                                     aGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCa                                                               >  2:231737/1‑100 (MQ=255)
                                      gCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGACAAGCGGTTGATTTTGTAGGCCTGATAAGACGTGGCGCCTCAGGCATCGTGCAc                                                              >  1:2326228/1‑100 (MQ=255)
                                      gCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCAc                                                              <  2:2488679/100‑1 (MQ=255)
                                      gCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCAc                                                              >  1:820981/1‑100 (MQ=255)
                                        cgcgCTGGTCGTGCTGAGCCAGAGGCTGGAGGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGGCTGATCAGGCGTGGCGCATCAGGCATAGTGCACCg                                                            >  2:1450274/1‑100 (MQ=255)
                                              cGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGcc                                                      <  2:2684265/100‑1 (MQ=255)
                                                  gAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGAt                                                  >  1:2803523/1‑100 (MQ=255)
                                                     cTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATgcg                                               <  1:1268571/100‑1 (MQ=255)
                                                     cTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATgcg                                               >  1:553356/1‑100 (MQ=255)
                                                       gctccAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTTCACCGAATGCCGGATgcggc                                             <  2:247788/97‑1 (MQ=255)
                                                       gcgcCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATgcggc                                             <  1:905804/100‑1 (MQ=255)
                                                       gcgcCAGTGGCTGGAAGAGGTGGTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATg                                                 <  2:2840531/96‑1 (MQ=255)
                                                        cgcCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTGGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATgcggcg                                            <  1:1324895/100‑1 (MQ=255)
                                                         gcCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATgcggcg                                            >  1:635033/1‑99 (MQ=255)
                                                         gcCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGt                                           >  1:3019611/1‑100 (MQ=255)
                                                          ccAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTg                                          <  1:2501971/100‑1 (MQ=255)
                                                           cAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGa                                         <  2:1085838/100‑1 (MQ=255)
                                                            ttatcatgcctaccaaacatattgaaattacgggtatttGTAGGACGGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGaa                                        >  2:2154250‑M1/40‑100 (MQ=255)
                                                            aGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGaa                                        >  2:259002/1‑100 (MQ=255)
                                                             gTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAAGGCTCGTGCACCGAATGCCGCATtcggaccctct                                       >  2:1858088/1‑93 (MQ=37)
                                                               ggCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGc                                     >  2:1335862/1‑100 (MQ=255)
                                                                gCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGTGGCGTGAACGcc                                    <  1:2134842/100‑1 (MQ=255)
                                                                gCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGcc                                    <  2:3079858/100‑1 (MQ=255)
                                                                 cTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCt                                   >  1:199149/1‑100 (MQ=255)
                                                                 cTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCt                                   >  1:1947286/1‑100 (MQ=255)
                                                                 cTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATACCGGATGCGGAGTGAAAGc                                     >  1:1733261/1‑98 (MQ=255)
                                                                    gAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGATGCGGCGTGAACGCCTTATc                               <  2:1874301/100‑1 (MQ=255)
                                                                       gagGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCg                             <  1:231739/100‑1 (MQ=255)
                                                                       gagGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGAAGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCg                             <  2:796251/100‑1 (MQ=255)
                                                                          gtgtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCTTGCACCGAATGCCGGATGCGGCGTGAACGCCTTgtccgtcc                          >  1:1555717/1‑100 (MQ=255)
                                                                          gtgtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTcc                          <  1:986261/100‑1 (MQ=255)
                                                                          gtgtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTcc                          <  1:1755940/100‑1 (MQ=255)
                                                                          gtgtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTcc                          <  2:2171663/100‑1 (MQ=255)
                                                                          aaacatattgaaattacgggtatttGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTcc                          >  1:1762543‑M1/26‑100 (MQ=255)
                                                                           tgtTGCTGAAAAGCGATTGATTTTTTAGGCCTGATAATACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGTGTGAACGCCTTATCCGTCCt                         <  2:590121/100‑1 (MQ=255)
                                                                           aacatattgaaattacgggtatttGTAGGACGGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCt                         >  1:2005241‑M1/25‑100 (MQ=255)
                                                                            gtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTa                        >  2:744492/1‑100 (MQ=255)
                                                                            gtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTa                        >  2:2009755/1‑100 (MQ=255)
                                                                            gtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTa                        >  2:780570/1‑100 (MQ=255)
                                                                             ttGCTGAAAAGCGATTGATTTTGTAGGCATGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTAc                       <  1:3103964/100‑1 (MQ=255)
                                                                              tGCTGAAAAGCGATTGATTTTGTAGGCCTTATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa                      <  2:2982909/100‑1 (MQ=255)
                                                                              tGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa                      <  2:1696263/100‑1 (MQ=255)
                                                                              tGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa                      >  1:2670773/1‑100 (MQ=255)
                                                                              tGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa                      >  2:1572773/1‑100 (MQ=255)
                                                                              tGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa                      >  1:1406151/1‑100 (MQ=255)
                                                                              atattgaaattacgggtatttGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa                      >  2:1993002‑M1/22‑100 (MQ=255)
                                                                               gCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACaa                     >  1:2896012/1‑100 (MQ=255)
                                                                               gCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACaa                     >  1:456270/1‑100 (MQ=255)
                                                                                 tGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAt                   <  2:1930106/100‑1 (MQ=255)
                                                                                   aaaaGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCAGCGTGAACGCCTTATCCGTCCTACAAATAc                 >  1:1418229/1‑100 (MQ=255)
                                                                                    aaattacgggtatttGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATAcc                >  2:431315‑M1/16‑100 (MQ=255)
                                                                                    aaaGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATAcc                <  1:2696364/100‑1 (MQ=255)
                                                                                       gCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGt             >  1:454767/1‑100 (MQ=255)
                                                                                          attgattTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAAt          >  1:429060/1‑100 (MQ=255)
                                                                                           ttgattTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAAtt         <  1:3128273/100‑1 (MQ=255)
                                                                                             gattTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTc       >  1:1579877/1‑100 (MQ=255)
                                                                                             gattTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTc       >  1:2956632/1‑100 (MQ=255)
                                                                                             gattTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTc       <  1:734959/100‑1 (MQ=255)
                                                                                              attTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCa      >  1:2583882/1‑100 (MQ=255)
                                                                                              attTTGTAGGCCTGATAAGACGTGGCGCAGCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCa      <  1:1388481/100‑1 (MQ=255)
                                                                                                tttGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGACGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAat    <  2:2277956‑M1/97‑1 (MQ=255)
                                                                                                 ttGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAata   >  1:679122‑M1/3‑100 (MQ=255)
                                                                                                   |                                                                                                  
GCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATAT  >  NC_000913/4632992‑4633189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.