New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 22497311 (0.090)15 (0.130) 12/166 NT 59.4% noncoding (1203/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 2729972 = NA (NA)noncoding (1186/1542 nt) rrsG 16S ribosomal RNA of rrnG operon

Only 100 of 107 total aligned reads displayed.

AGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTC  >  NC_000913/224875‑225072
                                                                                                  |                                                                                                   
aGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGtcatca                                                                                                    <  1:1111659/100‑1 (MQ=33)
aGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGtcatca                                                                                                    <  2:1102245/100‑1 (MQ=33)
aGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGtcatca                                                                                                    >  1:263813/1‑100 (MQ=33)
aGCGCAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCc                                                                                                    <  1:1351730‑M1/100‑2 (MQ=255)
 gcgtAACCTTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCc                                                                                                    <  1:403421‑M1/99‑2 (MQ=255)
 gcgcAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTcatcat                                                                                                   <  1:1549415/100‑1 (MQ=33)
 gcgcAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcc                                                                                                   <  1:1396259‑M1/100‑3 (MQ=255)
 gcgcAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcc                                                                                                   <  2:1143928‑M1/100‑3 (MQ=255)
 gcgcAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcc                                                                                                   <  2:830643‑M1/100‑3 (MQ=255)
 gcgcAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcc                                                                                                   <  1:1656859‑M1/100‑3 (MQ=255)
  tgtatttcTTATTTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTcatcat                                                                                                   <  1:882624/92‑1 (MQ=255)
  cgcAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATg                                                                                                  <  1:1226034/100‑1 (MQ=33)
  cgcAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATg                                                                                                  <  2:1883558/100‑1 (MQ=32)
  cgcAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCccc                                                                                                  <  1:836721‑M1/100‑4 (MQ=255)
  cgcAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCccc                                                                                                  <  1:140825‑M1/100‑4 (MQ=255)
  cgcAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCccc                                                                                                  <  2:2543958‑M1/100‑4 (MQ=255)
   gcAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCccca                                                                                                 <  2:2838948‑M1/100‑5 (MQ=255)
   gcAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATgg                                                                                                 >  2:1561431/1‑100 (MQ=33)
   gcAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCccca                                                                                                 <  1:2586648‑M1/100‑5 (MQ=255)
    cAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGc                                                                                                <  2:2217777/100‑1 (MQ=33)
    cAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcccac                                                                                                <  1:2260244‑M1/100‑6 (MQ=255)
    cAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcccac                                                                                                <  2:504198‑M1/100‑6 (MQ=255)
    cAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcccac                                                                                                <  1:3175620‑M1/100‑6 (MQ=255)
    cAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcccac                                                                                                <  2:2652580‑M1/100‑6 (MQ=255)
     aaCCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc                                                                                               <  1:1543432/100‑1 (MQ=33)
     aaCCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcccacc                                                                                               <  1:965189‑M1/100‑7 (MQ=255)
     aaCCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcccacc                                                                                               <  1:2670580‑M1/100‑7 (MQ=255)
     aaCCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcccacc                                                                                               <  1:3169120‑M1/100‑7 (MQ=255)
      aCCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcccacct                                                                                              <  1:1957694‑M1/100‑8 (MQ=255)
       cccTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCt                                                                                             >  2:1335061/1‑100 (MQ=33)
       cccTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCt                                                                                             >  2:3242691/1‑100 (MQ=33)
        ccTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc                                                                                               >  2:2239271/1‑97 (MQ=33)
         cTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGCGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa                                                                                           >  1:2677972/1‑100 (MQ=18)
          ttATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa                                                                                           <  1:130771/99‑1 (MQ=33)
          ttATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTAc                                                                                          <  1:2588773/100‑1 (MQ=33)
          ttATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTAc                                                                                          <  2:1174847/100‑1 (MQ=32)
           tATCTATTGTTGCCAGCGGTCCGGGCGGGAAGTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACg                                                                                         <  1:1360025/100‑1 (MQ=255)
            aTCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGa                                                                                        <  2:2086254/100‑1 (MQ=33)
                tttGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcccaccttcctccagtt                                                                                    <  1:446369‑M1/100‑18 (MQ=255)
                        aagCAGTCCGGACGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcccaccttcctccagtttatcactg                                                                            <  1:221928‑M1/99‑26 (MQ=255)
                            ggTCCGGCCGGGAACTGAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcccaccttcctccagtttatcactggcag                                                                        <  2:2366034‑M1/100‑30 (MQ=255)
                            ggTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTGACGTCATCcccaccttcctccagtttatcactggcag                                                                        <  1:2413598‑M1/100‑30 (MQ=255)
                                                                               ggggATGACGTCAAGTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcg                     >  2:2667520‑M1/1‑20 (MQ=255)
                                                                               ggggATGACGTCAAGTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcg                     >  2:2524265‑M1/1‑20 (MQ=255)
                                                                               ggggATGACGTCAAGTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcg                     >  1:60982‑M1/1‑20 (MQ=255)
                                                                                gggATGACGTCAAGTCATCcacaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggatgcgc                    >  2:3025476‑M1/1‑19 (MQ=255)
                                                                                 ggATGACGTCAAGTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgct                   >  2:2762021‑M1/1‑18 (MQ=255)
                                                                                  gATGACGTCAAGTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctc                  >  2:3209055‑M1/1‑17 (MQ=255)
                                                                                     gACGTCAAGTCATCcccaccttcctacagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgtt               >  2:895498‑M1/1‑14 (MQ=255)
                                                                                             gTCATCcccaccttcctccagtttatccctggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggact       <  2:1144812‑M1/100‑95 (MQ=255)
                                                                                             gTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggact       >  2:864848‑M1/1‑6 (MQ=255)
                                                                                             gTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggact       <  2:1900782‑M1/100‑95 (MQ=255)
                                                                                             gTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggact       <  2:1126228‑M1/100‑95 (MQ=255)
                                                                                             gTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggact       <  2:2589468‑M1/100‑95 (MQ=255)
                                                                                             gTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggact       >  2:417671‑M1/1‑6 (MQ=255)
                                                                                             gTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggact       <  2:3210411‑M1/100‑95 (MQ=255)
                                                                                             gTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggact       <  1:3172316‑M1/100‑95 (MQ=255)
                                                                                             gTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggact       >  1:2322247‑M1/1‑6 (MQ=255)
                                                                                             gTCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgtggcgggact       <  2:1565310‑M1/100‑95 (MQ=255)
                                                                                             gTCATCcccacctacctccagtttatccctggcagtctcctttgagttcccggccggaccgctggcaacaaagtataagggttgcgctcgttgcgggact       <  2:1467671‑M1/100‑95 (MQ=255)
                                                                                              tCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccgtccggaccgctggccacaaaggataagggttgcgctcgttgcgggactt      >  1:1540848‑M1/1‑5 (MQ=255)
                                                                                              tCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggactt      >  1:2079388‑M1/1‑5 (MQ=255)
                                                                                              tCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggactt      <  2:214226‑M1/100‑96 (MQ=255)
                                                                                              tCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggactt      >  2:1787286‑M1/1‑5 (MQ=255)
                                                                                              tCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggactt      >  1:3207391‑M1/1‑5 (MQ=255)
                                                                                              tCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggactt      >  2:1117856‑M1/1‑5 (MQ=255)
                                                                                              tCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggactt      <  2:2494921‑M1/100‑96 (MQ=255)
                                                                                              tCATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggactt      <  2:3068851‑M1/100‑96 (MQ=255)
                                                                                               cATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggactta     <  1:1514067‑M1/100‑97 (MQ=255)
                                                                                               cATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggactta     >  2:160466‑M1/1‑4 (MQ=255)
                                                                                               cATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggactta     <  2:122454‑M1/100‑97 (MQ=255)
                                                                                               cATCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggactta     >  1:9601‑M1/1‑4 (MQ=255)
                                                                                                aTCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaa    >  1:2799849‑M1/1‑3 (MQ=255)
                                                                                                aTCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaa    >  1:1556892‑M1/1‑3 (MQ=255)
                                                                                                aTCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaa    <  2:28434‑M1/100‑98 (MQ=255)
                                                                                                 tCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaac   >  2:2831733‑M1/1‑2 (MQ=255)
                                                                                                 tCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaac   >  1:1138325‑M1/1‑2 (MQ=255)
                                                                                                 tCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaac   >  2:2413099‑M1/1‑2 (MQ=255)
                                                                                                 tCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaac   >  1:2978959‑M1/1‑2 (MQ=255)
                                                                                                 tCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaac   <  1:392746‑M1/100‑99 (MQ=255)
                                                                                                 tCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaac   >  1:673812‑M1/1‑2 (MQ=255)
                                                                                                 tCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaac   <  1:761777‑M1/100‑99 (MQ=255)
                                                                                                 tCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaac   <  2:24388‑M1/100‑99 (MQ=255)
                                                                                                 tCcccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggactt      <  1:287437‑M1/97‑96 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacn  <  2:1046910‑M1/100‑100 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  <  2:915549‑M1/100‑100 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  <  1:1578540‑M1/100‑100 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  <  1:1756588‑M1/100‑100 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  >  1:178163‑M1/1‑1 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  <  2:636951‑M1/100‑100 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  >  2:578127‑M1/1‑1 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  >  1:2375575‑M1/1‑1 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  >  2:3214862‑M1/1‑1 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  >  1:3180376‑M1/1‑1 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  <  2:2635733‑M1/100‑100 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  >  2:2302455‑M1/1‑1 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  <  2:211010‑M1/100‑100 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  <  2:1280015‑M1/100‑100 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacc  <  2:1782309‑M1/100‑100 (MQ=255)
                                                                                                  ccccaccttcctccagtttatcactggcagtctccttggagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaac   <  2:1794666‑M1/99‑99 (MQ=255)
                                                                                                  |                                                                                                   
AGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTC  >  NC_000913/224875‑225072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.