BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2538614	NA (NA)	4 (0.040)	3/164	NT	NA	noncoding (80/98 nt)	RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	= 3706053	NA (NA)	4 (0.040)	3/164	NT	NA	noncoding (91/98 nt)	RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 135 total aligned reads displayed.

AAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACAC  >  NC_000913/2538515‑2538713

aaaaaGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGAT                                                                                                     >  1:1337055‑M1/1‑100 (MQ=255)

   aaGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAg                                                                                                  <  1:2793586/100‑1 (MQ=255)

    aGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGc                                                                                                 <  1:1207491/100‑1 (MQ=255)

     gTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCg                                                                                                <  2:2054301/100‑1 (MQ=255)

     gTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCg                                                                                                <  1:555222/100‑1 (MQ=255)

     gTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCg                                                                                                >  2:1812959/1‑100 (MQ=255)

       gcgcTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTa                                                                                              <  2:250384/100‑1 (MQ=255)

       gcgcTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTa                                                                                              >  2:3060109/1‑100 (MQ=255)

        cgcTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAg                                                                                             <  1:1588653/100‑1 (MQ=255)

         gcTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTTCAGAAACCTCGTAGGCCTGATAAGCGTAgc                                                                                            >  2:89190/1‑100 (MQ=255)

         gcTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAgc                                                                                            >  1:300214/1‑100 (MQ=255)

          cTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATgcgctacgct                                                                                           >  2:1916952‑M1/1‑90 (MQ=255)

          cTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAgc                                                                                            >  2:2009538/1‑99 (MQ=255)

           tttGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAgcgc                                                                                          <  1:547667/100‑1 (MQ=255)

              gTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATc                                                                                       >  1:155154/1‑100 (MQ=255)

               tttATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCa                                                                                      <  2:1321018/100‑1 (MQ=255)

                 tATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATgcgctacgcttatcagg                                                                                    <  1:2119614‑M1/100‑18 (MQ=255)

                  aTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATgcgctacgcttatcaggc                                                                                   <  1:594502‑M1/100‑19 (MQ=255)

                   tGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                  >  1:550206/1‑100 (MQ=255)

                     ccGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAg                                                                                 >  1:1171645/1‑99 (MQ=255)

                     ccGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGt                                                                                >  2:60973/1‑100 (MQ=255)

                      cGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGt                                                                                <  2:1040836/99‑1 (MQ=255)

                       ggATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGttt                                                                              >  1:3025848/1‑100 (MQ=255)

                         aTGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTg                                                                            <  1:233076/100‑1 (MQ=255)

                         aTGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTg                                                                            <  1:415586/100‑1 (MQ=255)

                          tGCGGCGGAAACGCTTTATCCGGCCTACAAAATCGTGCTAATTCAATGTATTGCAGAAACCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGc                                                                           <  2:1081050/100‑1 (MQ=17)

                           gcggcgTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATAGTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCg                                                                          <  1:1217723/100‑1 (MQ=255)

                            cggcgTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGt                                                                         <  1:2446242/100‑1 (MQ=255)

                             ggcgTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGtt                                                                        <  1:522992/100‑1 (MQ=255)

                              gcgTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGttt                                                                       >  1:1010091/1‑100 (MQ=255)

                              gcgTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGttt                                                                       <  2:3202328/100‑1 (MQ=255)

                               cgTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTg                                                                      <  1:2021834/100‑1 (MQ=255)

                                gTAAACGCCTTATCCGTTCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGt                                                                         <  1:1228642/96‑1 (MQ=255)

                                gTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGt                                                                     <  1:166448/100‑1 (MQ=255)

                                gTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGt                                                                     <  1:1285622/100‑1 (MQ=255)

                                 tAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGtc                                                                    <  2:1228573/100‑1 (MQ=255)

                                 tAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGtc                                                                    <  2:3094362/100‑1 (MQ=255)

                                  aaaCGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGtca                                                                   >  1:1233756/1‑100 (MQ=255)

                                   aaCGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGtcat                                                                  >  1:1486517/1‑100 (MQ=255)

                                      nccTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGAGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAg                                                               >  2:2946713/2‑100 (MQ=255)

                                      gCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGtcatca                                                                >  1:1831793/1‑99 (MQ=255)

                                       ccTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATCAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGt                                                              >  1:750274/1‑100 (MQ=255)

                                            tCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTCGCGCATCAGGCAGTTTTGCGTTTGTCGTCAGTCTCCg                                                         <  2:1736147/100‑1 (MQ=255)

                                              cGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGAt                                                       >  1:1437236/1‑100 (MQ=255)

                                              cGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGAt                                                       <  1:2680884/100‑1 (MQ=255)

                                                gCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGc                                                     <  2:447865/100‑1 (MQ=255)

                                                gCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGc                                                     <  2:1337047/100‑1 (MQ=255)

                                                 ccTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCt                                                    <  1:749770/100‑1 (MQ=255)

                                                  cTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTa                                                   >  1:2712203/1‑100 (MQ=255)

                                                   tACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTAt                                                  <  1:2586152/100‑1 (MQ=255)

                                                   tACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTAt                                                  >  2:3230149/1‑100 (MQ=255)

                                                   tACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTAt                                                  >  1:3120971/1‑100 (MQ=255)

                                                   tACAAAATCGTGCTAATTCAATATATTGCAAAAACCTTGTAGGCCTGATAAGCGTAGCGCAAAAGGCCGTTTTGCGTTTGTAATCAGTCTCAGATGCTa                                                   >  2:742941/1‑99 (MQ=18)

                                                    aCAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTAtt                                                 <  1:2327999/100‑1 (MQ=255)

                                                    aCAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTAtt                                                 >  2:3173312/1‑100 (MQ=255)

                                                    aCAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTAtt                                                 <  2:1238546/100‑1 (MQ=255)

                                                        aaTCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATc                                             <  1:1725866/100‑1 (MQ=255)

                                                         aTCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATcc                                            <  2:2366852/100‑1 (MQ=255)

                                                         aTCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATcc                                            <  1:463021/100‑1 (MQ=255)

                                                           cGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCtt                                          <  1:732189/100‑1 (MQ=255)

                                                             tGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTaa                                        <  2:69858/100‑1 (MQ=255)

                                                             tGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTaa                                        >  1:2758161/1‑100 (MQ=255)

                                                              gCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTaaa                                       >  1:2363365/1‑100 (MQ=255)

                                                               cTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAAt                                      >  2:2608521/1‑100 (MQ=255)

                                                               cTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAAt                                      >  2:2608455/1‑100 (MQ=255)

                                                                tAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATCAATCCTTAAATc                                     <  1:3230177/100‑1 (MQ=255)

                                                                 aaTTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATcc                                    >  1:1310408/1‑100 (MQ=255)

                                                                  aTTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATccc                                   >  2:1035245/1‑100 (MQ=255)

                                                                    tCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCg                                 >  2:2226015/1‑100 (MQ=255)

                                                                     cAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGc                                >  2:571813/1‑100 (MQ=255)

                                                                     cAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGc                                >  2:1724058/1‑100 (MQ=255)

                                                                       atatatTGCAGAAACCTTGTAGGCGTGATAAGCGTAGCGCAGCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGccc                              <  2:2979585/100‑1 (MQ=255)

                                                                         atatTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGCTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGccccc                            >  2:57348/1‑100 (MQ=255)

                                                                          tatTGCAGAAACCTTGTAGGCATGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCATTAAATCCCCGCCACCt                           >  2:944920/1‑100 (MQ=255)

                                                                           atTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTg                          <  2:915014/100‑1 (MQ=255)

                                                                             tGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCCGTCTCCGATGCTATTAATCATTAAATCACAGCACCCtag                         >  1:891504/1‑97 (MQ=21)

                                                                             tGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGc                        <  1:609124/100‑1 (MQ=255)

                                                                             tGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGc                        <  1:2097615/100‑1 (MQ=255)

                                                                             tGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGc                        <  1:153130/100‑1 (MQ=255)

                                                                              gCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTggtt                       >  2:1411514/1‑98 (MQ=255)

                                                                              gCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCt                       <  2:75567/100‑1 (MQ=255)

                                                                              gCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCt                       >  1:469077/1‑100 (MQ=255)

                                                                              gCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCt                       >  1:1763126/1‑100 (MQ=255)

                                                                               cAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTa                      >  2:2381523/1‑100 (MQ=255)

                                                                               cAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTa                      >  1:2014636/1‑100 (MQ=255)

                                                                                 gAAACCTTGTAGGCCTGATAAGCGTAGCGCATAAGGCCGTTTGGCGTTTGTCATCAGTCCGCGATGCTCTGACTACTTACATCCCCGccccccg                          >  2:3051231/1‑92 (MQ=17)

                                                                                  aaaCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTaaaa                   <  2:2377134/100‑1 (MQ=255)

                                                                                   aaCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAAt                  >  2:2529502/1‑100 (MQ=255)

                                                                                     ccTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGc                <  1:60974/100‑1 (MQ=255)

                                                                                     ccTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGc                <  2:1437228/100‑1 (MQ=255)

                                                                                       ttGTAGGCCTTATAAGCGTAGCGCATCAGGCATTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAATTCTCCTCCCCCTGGCTAAAATGctc              <  2:2481648/100‑1 (MQ=25)

                                                                                        tGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGctct             <  1:2698348/100‑1 (MQ=255)

                                                                                            ggCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTccc         >  1:2229297/1‑100 (MQ=255)

                                                                                            ggCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTcac         >  2:1971127/1‑98 (MQ=255)

                                                                                             gCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTcccc        <  2:2751264/100‑1 (MQ=255)

                                                                                                tGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCaaa     >  1:2429626/1‑100 (MQ=255)

                                                                                                 gATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAac    >  2:1597895/1‑100 (MQ=255)

                                                                                                 gATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAac    <  1:2946738/100‑1 (MQ=255)

                                                                                                 gATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAac    >  2:846770/1‑100 (MQ=255)

                                                                                                   tAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAacac  >  2:2163697/1‑100 (MQ=255)

AAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACAC  >  NC_000913/2538515‑2538713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.