BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3706060	NA (NA)	6 (0.060) +CTACGAAAA	4/160	NT	NA	noncoding (98/98 nt)	RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	3740998 =	NA (NA)	6 (0.060) +CTACGAAAA	4/160	NT	NA	noncoding (35/98 nt)	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 198 total aligned reads displayed.

GAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGC  >  NC_000913/3740899‑3741097

 aGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAttt                                                                                                    >  1:664803/1‑100 (MQ=255)

  ggCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTc                                                                                                   >  2:3194808/1‑100 (MQ=255)

  ggCGGGGGTGAAGATTCTGAAGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATAAGGCCTACATGATTTc                                                                                                   >  2:455591/1‑100 (MQ=255)

    cGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTg                                                                                                 <  2:3243924/100‑1 (MQ=255)

    cGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTg                                                                                                 >  2:1675747/1‑100 (MQ=255)

         gTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAata                                                                                            <  1:1425645/100‑1 (MQ=255)

          tGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAata                                                                                            >  1:1656382/1‑99 (MQ=255)

           gAAGATTCTGGCGGAAGAGATAGAAAGAGACTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCCGGCCTACATGATTTCTGCAatat                                                                                           >  2:730242/1‑99 (MQ=255)

            aaGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatatat                                                                                         <  2:861310/100‑1 (MQ=255)

             ngATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATAtt                                                                                        >  2:29811/2‑100 (MQ=255)

             aGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATAtt                                                                                        <  2:1659742/100‑1 (MQ=255)

                ttCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGaa                                                                                     <  2:1599448/100‑1 (MQ=255)

                 tCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAAt                                                                                    >  1:2212943/1‑100 (MQ=255)

                 tCTGACAGAAGAGATAGAAAGTGCCTGGTCTGAAAATCACTAATAACTGCCTTTTGCGTTTCTCTTATCAGGCCTACATGATTACTGAAatat                                                                                           <  2:274865/93‑1 (MQ=16)

                    ggCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTg                                                                                 <  1:996571/100‑1 (MQ=255)

                     gCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAAttt                                                                                  >  1:1132910/1‑98 (MQ=255)

                     gCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTgg                                                                                <  1:1389757/100‑1 (MQ=255)

                      cGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGga                                                                               <  1:724917/100‑1 (MQ=255)

                         aaGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGga                                                                               <  1:2536220/97‑1 (MQ=255)

                            agaTAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAtt                                                                         <  1:62726/100‑1 (MQ=255)

                             gaTAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAttt                                                                        >  2:2425763/1‑100 (MQ=255)

                             gaTAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAttt                                                                        >  2:3038061/1‑100 (MQ=255)

                             gaTAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAttt                                                                        >  1:1040002/1‑100 (MQ=255)

                               tAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGt                                                                      >  1:2885651/1‑100 (MQ=255)

                               tAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGt                                                                      <  2:2360623/100‑1 (MQ=255)

                               tAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGt                                                                      >  1:520023/1‑100 (MQ=255)

                                aGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTa                                                                     >  1:2365196/1‑100 (MQ=255)

                                 gAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAg                                                                    >  2:653184/1‑100 (MQ=255)

                                  aaaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAgg                                                                   >  1:2299304/1‑100 (MQ=255)

                                    agagCCTGGACTGAAAGTCAGTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAgg                                                                   <  2:1053426/98‑1 (MQ=255)

                                     gagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCg                                                                >  2:886476/1‑100 (MQ=255)

                                      agCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCgg                                                               <  1:2736027/100‑1 (MQ=255)

                                       gCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGTATTTGTAGGCCGGa                                                              >  2:2206206/1‑100 (MQ=255)

                                        ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGAt                                                             <  1:1629359/100‑1 (MQ=255)

                                        ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGAt                                                             <  1:2652324/100‑1 (MQ=255)

                                         cTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATa                                                            >  1:24627/1‑100 (MQ=255)

                                           gggCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAg                                                          <  2:1829582/100‑1 (MQ=255)

                                            ggCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAgg                                                         <  1:1722686/100‑1 (MQ=255)

                                            ggCTGAAAGTCAATAAAAATTGCCGGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAgg                                                         <  1:1026742/100‑1 (MQ=255)

                                             gctgccagccACTAAAAATTGCCTGATGCGCTCCGCTTATCAGGCCTACATGATTTCTGCAATACATTGAATTTGGACGAATTTGAAGGAAGGATAAgg                                                         >  2:2042044/10‑99 (MQ=17)

                                             gCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAg                                                          >  2:769087/1‑98 (MQ=255)

                                             gCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGc                                                        >  2:2831943/1‑100 (MQ=255)

                                             gCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGc                                                        <  1:1215449/100‑1 (MQ=255)

                                              cTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCg                                                       >  2:309949/1‑100 (MQ=255)

                                              cTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCg                                                       <  1:2835029/100‑1 (MQ=255)

                                               tGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGt                                                      <  2:1524238/100‑1 (MQ=255)

                                                gAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGtt                                                     <  1:2602574/100‑1 (MQ=255)

                                                 aaaGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGttt                                                    >  2:1175245/1‑100 (MQ=255)

                                                    gTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcg                                                 >  1:1149589/1‑100 (MQ=255)

                                                       aCTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgccg                                              >  1:3190362/1‑100 (MQ=255)

                                                       aCTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgccg                                              >  2:1775928/1‑100 (MQ=255)

                                                           aaaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATc                                          <  1:1111760/100‑1 (MQ=255)

                                                             aaTTGCCTTATTCCCTACTCTTATCACGCCTACATTATTTCTTCAATATATTCAATTTGGAAGAATTTGTAGGCCGGATAAGGCTTTTACGCCGCATCt                                         <  2:3045466/99‑1 (MQ=18)

                                                              aTTGCCTGATGCGCTACGCTTATCAGGCCTTCATGATTTTTGCAATATATTGTATTGGGAAGAGTTTGTAGTCCGGATAAGGCGTTTACGTCGCATCt                                         >  1:2275718/1‑98 (MQ=17)

                                                              aTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTgg                                       <  1:975834/100‑1 (MQ=255)

                                                               ttGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTTAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGc                                      <  1:2414683/100‑1 (MQ=255)

                                                               ttGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGc                                      <  1:1897685/100‑1 (MQ=255)

                                                               ttGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGc                                      <  1:800352/100‑1 (MQ=255)

                                                               aggcctgataagcgtagcgcatcaggcctacatgatTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGc                                      >  1:1275966‑M2/37‑100 (MQ=255)

                                                                ggcctgataagcgtagcgcatcaggcctacatgatTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCa                                     >  2:322014‑M2/36‑100 (MQ=255)

                                                                 gCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCAt                                    >  2:2536813/1‑100 (MQ=255)

                                                                 gCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCAt                                    >  1:1789615/1‑100 (MQ=255)

                                                                 gCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCAt                                    <  1:2144647/100‑1 (MQ=255)

                                                                  cctgataagcgtagcgcatcaggcctacatgatTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATa                                   >  2:1954015‑M2/34‑100 (MQ=255)

                                                                  ccTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCACCTGGCATa                                   >  2:724194/1‑100 (MQ=255)

                                                                   cTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATaa                                  <  1:455593/100‑1 (MQ=255)

                                                                    tGATGCGCTACGCTTATCAGGCCTACATGATTGCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATaa                                  <  2:2114833/99‑1 (MQ=255)

                                                                      aTGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATCTTGAATTTGGAAGAATTTGTAGGCCGGATAAGGTGTTTACGCCGCATCTGGCATAAACa                               <  2:1223185/100‑1 (MQ=255)

                                                                      aTGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACa                               <  1:886480/100‑1 (MQ=255)

                                                                        gcgcTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACaaa                             >  2:518081/1‑100 (MQ=255)

                                                                         cgcTACGCTTATCAGGCCTACATGATTGCTGCAATATATTGAAATTGGAAGAATTTGTAGGTCGGATAAGGCGTTTATGCCGCATCAGGCATAAACATAg                            <  2:2079179/100‑1 (MQ=17)

                                                                          gcTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAgc                           >  2:1579208/1‑100 (MQ=255)

                                                                          gcTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAgc                           <  2:742061/100‑1 (MQ=255)

                                                                           cTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAgcg                          <  1:1309263/100‑1 (MQ=255)

                                                                           cTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAgcg                          <  2:422071/100‑1 (MQ=255)

                                                                            tACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAgcgc                         <  2:441220/100‑1 (MQ=255)

                                                                              cGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCAc                       >  2:396644/1‑100 (MQ=255)

                                                                              cGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCAc                       <  2:961699/100‑1 (MQ=255)

                                                                              cGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCAc                       >  2:1602624/1‑100 (MQ=255)

                                                                               gCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACt                      <  2:1393890/100‑1 (MQ=255)

                                                                                 ttATCAGGCCTACATGATTTCTGCAATATTTTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGTATAAACAAAACGCACTg                     <  2:1329624/99‑1 (MQ=255)

                                                                                  tATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGTGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGtt                   >  1:773602/1‑100 (MQ=255)

                                                                                  tATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGtt                   >  2:1355727/1‑100 (MQ=255)

                                                                                   aTCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTc                  <  1:29811/100‑1 (MQ=255)

                                                                                     cAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCg                <  1:3104646/100‑1 (MQ=255)

                                                                                      aGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCgg               <  2:34539/100‑1 (MQ=255)

                                                                                         ccTACATGATTTCTGTAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGt            <  1:3194836/100‑1 (MQ=255)

                                                                                         ccTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGt            >  2:93037/1‑100 (MQ=255)

                                                                                           tACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTg          <  2:24627/100‑1 (MQ=255)

                                                                                            aCATGATTTCTGCAATATATTGAATTTGGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTga         <  2:2668410/100‑1 (MQ=255)

                                                                                            aCATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTga         >  2:948946/1‑100 (MQ=255)

                                                                                             cATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTgag        <  2:571136/100‑1 (MQ=255)

                                                                                             cATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTgag        >  2:2885286/1‑100 (MQ=255)

                                                                                              aTGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTgaga       <  1:2010152/100‑1 (MQ=255)

                                                                                               tGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGaa      >  1:706512/1‑100 (MQ=255)

                                                                                               tGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGaa      <  2:2289476/100‑1 (MQ=255)

                                                                                                gATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGaaa     >  2:1693175/1‑100 (MQ=255)

                                                                                                 aTTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAAc    >  1:759077/1‑100 (MQ=255)

                                                                                                 aTTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAAc    <  1:2032161/100‑1 (MQ=255)

                                                                                                   ttCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGc  >  2:1359874/1‑100 (MQ=255)

GAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGC  >  NC_000913/3740899‑3741097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.