New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3706060NA (NA)6 (0.050) 3/164 NT NA noncoding (98/98 nt) RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3877658 NA (NA)noncoding (73/98 nt) RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 148 total aligned reads displayed.

ATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGG  >  NC_000913/3877559‑3877756
                                                                                                   |                                                                                                  
 tctcCGCTCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAg                                                                                                    <  1:928851/99‑1 (MQ=255)
 tctcCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGg                                                                                                   >  2:1783914‑M2/1‑99 (MQ=255)
 tctcCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGg                                                                                                   <  2:2536680‑M2/100‑2 (MQ=255)
  ctcCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGgc                                                                                                  >  1:189250‑M2/1‑98 (MQ=255)
   tcCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGgc                                                                                                  >  1:2985459‑M2/1‑97 (MQ=255)
    ccGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGgcct                                                                                                <  1:3072776‑M2/100‑5 (MQ=255)
    ccGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGgcct                                                                                                <  1:2774858‑M2/100‑5 (MQ=255)
    ccGCCCCTTTCTTATAGCTTCTTGCCGGATACAGAGTGAAAGCCTCAACCACCTTAAAAAATCAATAAAATTCAATACAAATAAAGATTGTCCTAGGc                                                                                                  >  2:308481/1‑98 (MQ=255)
     cGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCCTGAACGCCTTATCCGACCTACAAAATCATGACAATTCAATACATTGCAAGATTTTCGTCGgcctg                                                                                               <  2:444257‑M2/100‑6 (MQ=255)
      gCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGgcctga                                                                                              <  2:926689‑M2/100‑7 (MQ=255)
          ttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATaa                                                                                           >  1:140639/1‑99 (MQ=255)
          ttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAg                                                                                          <  1:2536698/100‑1 (MQ=255)
          ttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAg                                                                                          <  2:719179/100‑1 (MQ=255)
          ttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAg                                                                                          <  2:2349508/100‑1 (MQ=255)
           tttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGc                                                                                         <  1:2965300/100‑1 (MQ=255)
            ttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCg                                                                                        <  2:1121059/100‑1 (MQ=255)
              cTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACTCATGAAAATTCAATACATTGCAAGATTTTCGTAGACCTTATAAGCGTa                                                                                      >  1:63171/1‑100 (MQ=255)
               ttATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAg                                                                                     >  2:476953/1‑100 (MQ=255)
                  taGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAgcgc                                                                                  >  2:2173765/1‑100 (MQ=255)
                  taGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAgcgc                                                                                  >  1:1394213/1‑100 (MQ=255)
                       tcttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAg                                                                             >  2:2176714/1‑100 (MQ=255)
                          tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGgcctgatgcgctacgcttatcaggcc                                                                          >  2:3006009‑M2/1‑74 (MQ=255)
                          tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                          >  1:227833/1‑100 (MQ=255)
                          tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                          <  2:3237205/100‑1 (MQ=255)
                          tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                          >  2:2017707/1‑100 (MQ=255)
                           gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAc                                                                         >  1:2374217/1‑100 (MQ=255)
                            ccGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGgcctgatgcgctacgcttatcaggccta                                                                        >  1:1176111‑M2/1‑72 (MQ=255)
                            ccGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGCTAAGCGTAGCGCATCAGGCAc                                                                         <  2:2798677/99‑1 (MQ=255)
                             cGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGgcctgatgcgctacgcttatcaggcctac                                                                       >  2:1654213‑M2/1‑71 (MQ=255)
                             cGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGc                                                                       <  1:458266/100‑1 (MQ=255)
                                aTGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCg                                                                    <  2:335253/100‑1 (MQ=255)
                                aTGCGACGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCg                                                                    <  2:575148/100‑1 (MQ=255)
                                   cggcgTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGTACGCTCGCAt                                                                 >  2:2560768/1‑100 (MQ=255)
                                    ggcgTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATg                                                                <  2:1937481/100‑1 (MQ=255)
                                    ggcgTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATg                                                                >  2:1795347/1‑100 (MQ=255)
                                    ggcgTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATg                                                                >  2:866389/1‑100 (MQ=255)
                                     gcgTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGgcctgatgcgctacgcttatcaggcctacgagatcgg                                                               <  2:1513200‑M2/100‑38 (MQ=255)
                                      cgTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGt                                                              >  2:3124709/1‑100 (MQ=255)
                                       gTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGtt                                                             >  2:965268/1‑100 (MQ=255)
                                         gtaCGCCTTATCCCGCCTACAAAATCATGAAGATTCAATACAGTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAg                                                           >  1:2193539/3‑100 (MQ=21)
                                           aCGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAgcg                                                         <  2:2634093/100‑1 (MQ=255)
                                           aCGCCTTATCCCGCCTACAAAGTCATGAAAACTCAATACATTGCAAGATATTCGTAGGCCTGCTAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAgc                                                          <  2:3210867/99‑1 (MQ=21)
                                             gCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGcc                                                       <  1:1527580/100‑1 (MQ=255)
                                              ccTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCa                                                      <  1:327471/100‑1 (MQ=255)
                                              ccTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCa                                                      >  2:718783/1‑100 (MQ=255)
                                              ccTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCa                                                      >  1:2766327/1‑100 (MQ=255)
                                                ttATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCAtt                                                    <  1:2896818/100‑1 (MQ=255)
                                                ttATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCAtt                                                    <  2:1389277/100‑1 (MQ=255)
                                                  aTCCGGACTACAAAATAAGGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTaa                                                  <  1:358284/100‑1 (MQ=255)
                                                   tCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTaaa                                                 >  2:1069550/1‑100 (MQ=255)
                                                    ccGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGACATTAAat                                                >  2:2048125/1‑100 (MQ=255)
                                                     cGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAata                                               <  2:687/100‑1 (MQ=255)
                                                       gCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATc                                             >  1:1007372/1‑100 (MQ=255)
                                                         cTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCGTGGTTAGCGCCATTAAATATCGa                                           >  2:2413434/1‑100 (MQ=255)
                                                         cTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGa                                           <  2:227831/100‑1 (MQ=255)
                                                          tACAGAATCATGAAAATTCAATACATTGCAAGAGTTTCGTAGCCATGATAAGAGTAACGCATCAGTCAAGCTCGCATGGTTAGCGCGATTAACTATCGa                                           >  2:2836335/1‑99 (MQ=21)
                                                          tACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGat                                          <  1:1540871/100‑1 (MQ=255)
                                                           aCAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGata                                         >  1:2356143/1‑100 (MQ=255)
                                                                 tCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTcgcc                                   <  1:1511969/100‑1 (MQ=255)
                                                                  cATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTcgccg                                  >  2:748586/1‑100 (MQ=255)
                                                                   aTGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTcgccgc                                 <  1:586177/100‑1 (MQ=255)
                                                                   aTGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTcgccgc                                 <  1:1281383/100‑1 (MQ=255)
                                                                    tGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCt                                >  2:1457502/1‑100 (MQ=255)
                                                                     gAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCtt                               >  2:1220110/1‑100 (MQ=255)
                                                                     gAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCtt                               <  2:335006/100‑1 (MQ=255)
                                                                      aaaaTTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCttt                              >  2:884889/1‑100 (MQ=255)
                                                                      aaaaTTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCttt                              >  2:1113771/1‑100 (MQ=255)
                                                                         aTTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAg                           >  2:1295576/1‑100 (MQ=255)
                                                                         aTTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAg                           <  2:2411002/100‑1 (MQ=255)
                                                                           tCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAggg                         >  1:1273148/1‑100 (MQ=255)
                                                                              aTACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGt                      >  2:2677657/1‑100 (MQ=255)
                                                                              aTACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGt                      >  1:548755/1‑100 (MQ=255)
                                                                              aTACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGt                      <  1:637590/100‑1 (MQ=255)
                                                                               tACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGtt                     <  2:2355721/100‑1 (MQ=255)
                                                                                aCATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTtc                    <  1:1457510/100‑1 (MQ=255)
                                                                                aCATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTtc                    <  1:1378497/100‑1 (MQ=255)
                                                                                aCATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTtc                    <  1:2173781/100‑1 (MQ=255)
                                                                                 cATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTtct                   <  1:1831851/100‑1 (MQ=255)
                                                                                   ttttaaGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTctct                 <  1:830155/96‑1 (MQ=255)
                                                                                   ttGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTctct                 <  1:1102681/100‑1 (MQ=255)
                                                                                   ttGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTctct                 <  2:1349725/100‑1 (MQ=255)
                                                                                   ntGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTctct                 >  1:1384648/2‑100 (MQ=255)
                                                                                    tGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCtt                >  2:281363/1‑100 (MQ=255)
                                                                                     gCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCtt                >  2:1679927/1‑99 (MQ=255)
                                                                                     gCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTc               >  1:3139295/1‑100 (MQ=255)
                                                                                     gCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTc               >  2:63169/1‑100 (MQ=255)
                                                                                     gCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTc               >  2:1151370/1‑100 (MQ=255)
                                                                                       taGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCGTGGTTAGCGCCATTTAATATCGTTATTCGCCTCTTTCAGGGCGTTCTCTTCa              <  2:1976629/98‑1 (MQ=38)
                                                                                       aaGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCaa             <  2:2960330/100‑1 (MQ=255)
                                                                                       aaGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCaa             <  1:296198/100‑1 (MQ=255)
                                                                                       aaGATGTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCaa             <  2:1231778/100‑1 (MQ=255)
                                                                                        aGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAAt            <  1:837768/100‑1 (MQ=255)
                                                                                        aGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAAt            <  1:2430071/100‑1 (MQ=255)
                                                                                            tttCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAAc        >  1:946958/1‑100 (MQ=255)
                                                                                               cGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCa     <  2:442066/100‑1 (MQ=255)
                                                                                                ttAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCAc    <  1:577472/99‑1 (MQ=255)
                                                                                                gTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCAc    >  1:554250/1‑100 (MQ=255)
                                                                                                gTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCAc    <  1:1804414/100‑1 (MQ=255)
                                                                                                gTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCAc    >  2:223635/1‑100 (MQ=255)
                                                                                                  aGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACgg  >  2:728582/1‑100 (MQ=255)
                                                                                                   |                                                                                                  
ATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGG  >  NC_000913/3877559‑3877756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.