New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4148478NA (NA)4 (0.040) 4/164 NT NA noncoding (49/82 nt) REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4148511 NA (NA)noncoding (82/82 nt) REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 170 total aligned reads displayed.

CATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAAT  >  NC_000913/4148412‑4148609
                                                                                                   |                                                                                                  
 aTTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCa                                                                                                   <  2:1067616/100‑1 (MQ=255)
     cGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATa                                                                                               >  1:1105603/1‑100 (MQ=255)
          gTTGTATTGCCTGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGcc                                                                                          <  1:264431/100‑1 (MQ=255)
          gTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGcc                                                                                          <  2:3052925/100‑1 (MQ=255)
          gTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGcc                                                                                          >  1:337273/1‑100 (MQ=255)
            cgatctGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTg                                                                                        <  2:1009160/95‑1 (MQ=255)
             gTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTgg                                                                                       >  1:2657642/1‑100 (MQ=255)
             gTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTgg                                                                                       >  1:2941634/1‑100 (MQ=255)
              tATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGc                                                                                      <  1:2580414/100‑1 (MQ=255)
              tATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGc                                                                                      >  2:1750410/1‑100 (MQ=255)
                ttGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCACATCCGGCAAATAGCGCCTGGCTg                                                                                    >  1:2477546/1‑100 (MQ=255)
                  gCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTgagatcg                                                                                  >  1:1009165/1‑94 (MQ=255)
                  gCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGAt                                                                                  <  1:106901/100‑1 (MQ=255)
                     ggATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAAt                                                                               >  1:2805646/1‑100 (MQ=255)
                      gATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAAtt                                                                              <  1:3171101/100‑1 (MQ=255)
                        tgtgGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTAc                                                                            <  2:1960091/100‑1 (MQ=255)
                        tgtgGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTAc                                                                            >  1:2802553/1‑100 (MQ=255)
                          tgGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTg                                                                          <  1:1242916/100‑1 (MQ=255)
                          tgGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTg                                                                          <  2:406591/100‑1 (MQ=255)
                           ggCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGa                                                                         >  2:2292587/1‑100 (MQ=255)
                            gCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGa                                                                         <  1:953435/99‑1 (MQ=255)
                             cGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAAGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGAtt                                                                       <  1:1619006/100‑1 (MQ=255)
                                aaaCGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTAc                                                                     >  2:1703206/1‑99 (MQ=255)
                                 aaCGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTAcc                                                                    >  1:2834646/1‑99 (MQ=255)
                                  aCGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCa                                                                  >  2:2684276/1‑100 (MQ=255)
                                   cGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCAc                                                                 >  2:2743603/1‑100 (MQ=255)
                                    gCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCAcc                                                                <  1:771430/100‑1 (MQ=255)
                                     ccTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCt                                                               >  1:1220205/1‑100 (MQ=255)
                                      cTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTg                                                              >  1:2350315/1‑100 (MQ=255)
                                       ttATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGa                                                             >  2:1174846/1‑100 (MQ=255)
                                        tATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGAt                                                            >  2:2397460/1‑100 (MQ=255)
                                          tCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCg                                                          >  1:240777/1‑100 (MQ=255)
                                          tCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCg                                                          >  2:778304/1‑100 (MQ=255)
                                          tCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCg                                                          <  1:1195405/100‑1 (MQ=255)
                                          tCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCg                                                          <  1:3027836/100‑1 (MQ=255)
                                           ccAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGc                                                         >  2:932411/1‑100 (MQ=255)
                                               ccTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATa                                                     <  2:1105598/100‑1 (MQ=255)
                                                 tACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAgg                                                   <  2:1446173/100‑1 (MQ=255)
                                                  aCCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAggg                                                  <  1:268416/100‑1 (MQ=255)
                                                     gccgcGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAg                                               >  2:243643/1‑100 (MQ=255)
                                                     gccgcGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAg                                               >  2:2245163/1‑100 (MQ=255)
                                                     gccgcGATCTGTAGGCCGGATAAGACGCGTCAAGCGACGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAg                                               >  1:2290250/1‑100 (MQ=255)
                                                       cgcgATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgtg                                             <  1:1906211/100‑1 (MQ=255)
                                                       cgcgATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgtg                                             <  2:2967462/100‑1 (MQ=255)
                                                        gcgATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgtgt                                            >  1:1648998/1‑100 (MQ=255)
                                                          gATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAgtgtgt                                          >  1:3068162/1‑100 (MQ=255)
                                                           aTCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTc                                         <  1:485224/100‑1 (MQ=255)
                                                            tCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCTCCTGGTTGATAATTACTGATTAATCACCTAATCGTCATAGGGCAgtgtgatg                                        >  1:2474312/1‑97 (MQ=25)
                                                            tCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGGTAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCg                                        >  2:2079431/1‑100 (MQ=255)
                                                             cTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGt                                       <  1:1568949/100‑1 (MQ=255)
                                                              tGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTa                                      <  1:350795/100‑1 (MQ=255)
                                                               gTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgc                                     <  1:2907516‑M2/100‑64 (MQ=255)
                                                               gTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTaa                                     >  2:2251836/1‑100 (MQ=255)
                                                               gTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTaa                                     >  2:381306/1‑100 (MQ=255)
                                                                tAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAAt                                    <  1:1749202/100‑1 (MQ=255)
                                                                tAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAAt                                    <  2:1369559/100‑1 (MQ=255)
                                                                 aGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaa                                   <  1:1834857‑M2/100‑66 (MQ=255)
                                                                 aGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATc                                   <  2:337271/100‑1 (MQ=255)
                                                                 aGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATc                                   <  2:341542/100‑1 (MQ=255)
                                                                 aGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATc                                   >  1:2055934/1‑100 (MQ=255)
                                                                  ggCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCg                                  >  2:35867/1‑100 (MQ=255)
                                                                   gCCGGATAAGACGCGTCAAGCGTCGCATCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgccatg                                 <  2:2307601‑M2/100‑68 (MQ=255)
                                                                   gCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAACAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGa                                 >  2:3074586/1‑100 (MQ=255)
                                                                    ccGGATAAGACGCGTCAAGCGTCGCATCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgt                                <  1:31375‑M2/100‑69 (MQ=255)
                                                                    ccGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGAt                                <  2:855728/100‑1 (MQ=255)
                                                                     ctgATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATc                               <  1:525173/98‑1 (MQ=255)
                                                                      ggATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCa                              <  2:489927/100‑1 (MQ=255)
                                                                      ggATAAGACGCGTCAAGCGTCGCAGCCGGCAAATAGCGCCTGGCTGATAATGACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATc                               <  1:2951843/99‑1 (MQ=255)
                                                                         tAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCTCCTGGCTAATAATTACTGATTACCCACCTGATCGCCATATGTCATTGTGTCGTAATCGATCAGTg                           <  2:1422580/100‑1 (MQ=38)
                                                                           aGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCg                         <  1:2743626/100‑1 (MQ=255)
                                                                            gACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTTTCGTAATCGATCAGTGCGt                        >  1:2336949/1‑100 (MQ=255)
                                                                             aCGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGtt                       <  2:2336933/100‑1 (MQ=255)
                                                                              cgcgTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGttt                      >  2:1722158/1‑100 (MQ=255)
                                                                                 gTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTc                   <  1:956196/100‑1 (MQ=255)
                                                                                  tCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCt                  <  1:2788438/100‑1 (MQ=255)
                                                                                   cAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCtt                 <  1:1111607/100‑1 (MQ=255)
                                                                                    aaGCGTCGCATCCGGCTAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTta                <  2:1900758/100‑1 (MQ=255)
                                                                                     aGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTtat               >  1:616976/1‑100 (MQ=255)
                                                                                     aGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTtat               <  1:2068528/100‑1 (MQ=255)
                                                                                     aGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGAGTGTCGTAATCGATCAGTGCGTTTTTCTtat               >  2:1209710/1‑100 (MQ=255)
                                                                                      gCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTtata              >  2:2351188/1‑100 (MQ=255)
                                                                                        gTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGATTTTCTTATAc             >  2:1065997/1‑99 (MQ=255)
                                                                                         tCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACgg           >  1:1236863/1‑100 (MQ=255)
                                                                                          cGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACggg          >  1:2122782/1‑100 (MQ=255)
                                                                                          cGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACggg          <  2:1666516/100‑1 (MQ=255)
                                                                                          cGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACggg          <  2:812830/100‑1 (MQ=255)
                                                                                           gCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCCGTGTGTCGTAATCGATCAATGCGTTTTTCTTATACggg          >  2:301236/1‑99 (MQ=255)
                                                                                           gCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGt         <  2:2512450/100‑1 (MQ=255)
                                                                                             aTCCGGGctagagagcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggcc         >  2:2951816‑M2/1‑7 (MQ=255)
                                                                                             aTCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATGGGGCAGTGTATCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTa       <  1:3193286/100‑1 (MQ=255)
                                                                                              tCCGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggccaca      <  2:269913‑M2/100‑95 (MQ=255)
                                                                                              tCCAGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTAc      <  2:1246702/100‑1 (MQ=255)
                                                                                               ccGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggccacac     <  2:1895827‑M2/100‑96 (MQ=255)
                                                                                               ccGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTAcc     >  2:3128447/1‑100 (MQ=255)
                                                                                               ccGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTAcc     <  1:1692944/100‑1 (MQ=255)
                                                                                               ccGGCAAATAGCGACTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTAcc     <  1:858194/100‑1 (MQ=255)
                                                                                                cGGCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggccacact    >  1:1369567‑M2/1‑4 (MQ=255)
                                                                                                cGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCa    >  1:2758063/1‑100 (MQ=255)
                                                                                                 ggCctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggccacactt   >  2:2068513‑M2/1‑3 (MQ=255)
                                                                                                  gCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAAt  <  2:2805622/100‑1 (MQ=255)
                                                                                                   |                                                                                                  
CATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGATTACCCACCTGATCGCCATAGGGCAGTGTGTCGTAATCGATCAGTGCGTTTTTCTTATACGGGTTACCAAT  >  NC_000913/4148412‑4148609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.