New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 173588NA (NA)5 (0.050) 4/164 NT NA noncoding (85/85 nt) REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2443819 = NA (NA)noncoding (31/80 nt) REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 151 total aligned reads displayed.

CGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGG  >  NC_000913/2443720‑2443918
                                                                                                   |                                                                                                   
cGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGAcc                                                                                                     <  2:19449/100‑1 (MQ=255)
 cgcgacaacggatgcccgatgcgacgctggcgcgtcttatcgggcctacaaacggccccgaatcgtaggtcggatgcggcgtgaacgccttatccgacc                                                                                                     <  1:2267649‑M2/1‑1 (MQ=255)
   ttATGGGTGCGGAAATTGTTGAAGGGTACAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTa                                                                                                   <  1:1451557/99‑1 (MQ=255)
    tATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACg                                                                                                 <  1:2136699/100‑1 (MQ=255)
    tATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACg                                                                                                 <  1:765445/100‑1 (MQ=255)
         gTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGa                                                                                            >  2:873045/1‑100 (MQ=255)
          tGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGAc                                                                                           >  2:841682/1‑100 (MQ=255)
          tGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGAc                                                                                           <  1:2760851/100‑1 (MQ=255)
           gCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACg                                                                                          >  2:1506973/1‑100 (MQ=255)
            cGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACgt                                                                                         >  2:3020769/1‑100 (MQ=255)
            cGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACgt                                                                                         >  1:1652600/1‑100 (MQ=255)
             ggAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACgtg                                                                                        >  1:1590962/1‑100 (MQ=255)
             ggAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACgtg                                                                                        >  2:669372/1‑100 (MQ=255)
              gAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACgtgt                                                                                       <  2:3180772/100‑1 (MQ=255)
               aaaTTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTa                                                                                      >  2:2310719/1‑100 (MQ=255)
                    gttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCt                                                                                 >  1:1447131/1‑100 (MQ=255)
                    gttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCt                                                                                 <  1:2065346/100‑1 (MQ=255)
                     ttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTg                                                                                <  1:325669/100‑1 (MQ=255)
                     ttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTg                                                                                <  1:1176169/100‑1 (MQ=255)
                       gAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGAt                                                                              <  2:313733/100‑1 (MQ=255)
                        aaGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATa                                                                             <  2:3028583/100‑1 (MQ=255)
                        aaGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATa                                                                             <  1:1029426/100‑1 (MQ=255)
                        aaGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATa                                                                             >  1:2233795/1‑100 (MQ=255)
                          gggTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAg                                                                           >  1:2487747/1‑100 (MQ=255)
                            gTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGAc                                                                         >  2:2311009/1‑100 (MQ=255)
                             tAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGAcg                                                                        >  2:1568980/1‑100 (MQ=255)
                              aaaGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGAcgc                                                                       >  2:1825677/1‑100 (MQ=255)
                              aaaGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGAcgc                                                                       >  2:3199966/1‑100 (MQ=255)
                              aaaGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGAcgc                                                                       <  2:3139895/100‑1 (MQ=255)
                                aGCGGTTATGTCGGGGTAATCAACTCTAGCCGTGTTTGCAGGATGGGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACgaga                                                                     >  2:397732/1‑100 (MQ=25)
                                aGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGa                                                                     <  1:603478/100‑1 (MQ=255)
                                    gTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAg                                                                 <  1:396671/100‑1 (MQ=255)
                                     ttAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGc                                                                >  2:1097940/1‑100 (MQ=255)
                                     ttAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGc                                                                <  1:992283/100‑1 (MQ=255)
                                      tAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCg                                                               <  1:520409/100‑1 (MQ=255)
                                        aGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTc                                                             <  2:2659763/100‑1 (MQ=255)
                                             gggTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTGCGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATc                                                        >  2:2083680/1‑100 (MQ=255)
                                             gggTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATc                                                        >  2:806352/1‑100 (MQ=255)
                                              ggTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCa                                                       <  1:2378909/100‑1 (MQ=255)
                                                tAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAgg                                                     <  1:669373/100‑1 (MQ=255)
                                                  aTCTGCTCTCGCGGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCa                                                   >  2:2873797/1‑100 (MQ=255)
                                                  aTCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCa                                                   <  2:1003709/100‑1 (MQ=255)
                                                  aTCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGCAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCa                                                   <  1:2295496/100‑1 (MQ=255)
                                                   tCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAt                                                  >  2:2886338/1‑100 (MQ=255)
                                                   tCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAt                                                  >  2:1251634/1‑100 (MQ=255)
                                                     tGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgc                                                >  2:1369935/1‑100 (MQ=255)
                                                     tGCTCTCGCAGTGTTTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAt                                                  >  2:1373027/1‑98 (MQ=255)
                                                      gCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgct                                               <  1:3050365/100‑1 (MQ=255)
                                                      gCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgct                                               >  2:1911631/1‑100 (MQ=255)
                                                       ctctCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTTGCATCAGGCAtgctg                                              >  1:3202100/1‑100 (MQ=255)
                                                       ctctCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgctg                                              >  1:1922178/1‑100 (MQ=255)
                                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcn                                          <  1:1530304/100‑2 (MQ=255)
                                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcc                                          >  2:2166325/1‑100 (MQ=255)
                                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcc                                          >  1:2590118/1‑100 (MQ=255)
                                                            gCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCa                                         >  1:829829/1‑100 (MQ=255)
                                                            gCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCa                                         <  1:1506981/100‑1 (MQ=255)
                                                             cAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCTTCGCATCAGGCATGCTGCTCCa                                         <  2:739078/99‑1 (MQ=255)
                                                             cAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAg                                        <  2:1176640/100‑1 (MQ=255)
                                                             cAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAg                                        <  1:1743685/100‑1 (MQ=255)
                                                                tgtTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcg                                     >  2:1688560/1‑100 (MQ=255)
                                                                cgtaggtcggataaggcgttcacgccgcatccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcg                                     >  1:1278627‑M2/36‑100 (MQ=255)
                                                                 gtTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTAAGTGTGACGTGTAGGTCTGGTAAGACGCGGTTAGCGTCGCATCAGGGATGCTGGTCCAgcagc                                    >  2:569041/1‑96 (MQ=25)
                                                                   ttGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccg                                  <  2:940065/100‑1 (MQ=255)
                                                                    tGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccgc                                 >  1:466151/1‑100 (MQ=255)
                                                                    ggtcggataaggcgttcacgccgcatccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccgc                                 >  2:1154902‑M2/32‑100 (MQ=255)
                                                                     gCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCa                                >  1:105661/1‑100 (MQ=255)
                                                                     gCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCa                                <  1:1788037/100‑1 (MQ=255)
                                                                     gCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCa                                <  1:2956796/100‑1 (MQ=255)
                                                                      ccGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCaa                               >  2:1271316/1‑100 (MQ=255)
                                                                       cggataaggcgttcacgccgcatccgacCTACGTGTGAGGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAAc                              >  2:1994249‑M2/29‑100 (MQ=255)
                                                                        ggATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACt                             >  2:2266102/1‑100 (MQ=255)
                                                                         gATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACtt                            >  1:1416072/1‑100 (MQ=255)
                                                                           tGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTAc                          <  1:842564/100‑1 (MQ=255)
                                                                            gcggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTAct                         >  2:454944/1‑100 (MQ=255)
                                                                             cggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActg                        >  2:1459156/1‑100 (MQ=255)
                                                                             cggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActg                        >  1:3047924/1‑100 (MQ=255)
                                                                             cggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActg                        <  2:2286294/100‑1 (MQ=255)
                                                                             cggcgTGAACGCCTGATCCGACCTACGTTTGACGTGTAGGCCTGATAAGACTCGATAAGCGTCGCATCAGGCATGCTGCTGCAGACGCCGCAACGTa                           >  1:1771021/1‑97 (MQ=37)
                                                                                cgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActgctg                     <  1:1138229/100‑1 (MQ=255)
                                                                                cgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActgctg                     <  2:521853/100‑1 (MQ=255)
                                                                                     aCGCCTTATGAGACCTACGTGTGACGTGTAGGCCGGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCtgtg                   <  1:1903709/97‑1 (MQ=255)
                                                                                      cGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGc               >  1:1332229/1‑100 (MQ=255)
                                                                                      cGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCCCCAGACGCCGCAACTTACCGCTGTGAc                 >  2:2940121/1‑98 (MQ=255)
                                                                                       gCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAGGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGcc              <  1:2311025/100‑1 (MQ=255)
                                                                                       gCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGcc              <  1:1825689/100‑1 (MQ=255)
                                                                                        ccTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCct             >  2:2603518/1‑100 (MQ=255)
                                                                                        ccTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCct             >  1:1212186/1‑100 (MQ=255)
                                                                                        ccTTATCCCACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCct             >  2:539015/1‑100 (MQ=255)
                                                                                          ttATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctgc           <  2:2482378/100‑1 (MQ=255)
                                                                                           tATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctgct          <  2:2731188/100‑1 (MQ=255)
                                                                                            atccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTTCTGTGACGCctgctg         <  1:2886232‑M2/93‑1 (MQ=255)
                                                                                            atccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctgctg         <  1:2383894‑M2/93‑1 (MQ=255)
                                                                                             tccgacCTACGTGTGACGTGTAGGCCTGATAAGATGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGTCTGCTGa        <  2:894247‑M2/94‑1 (MQ=255)
                                                                                             tccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACgcctgctca        <  1:3005950‑M2/94‑3 (MQ=255)
                                                                                             tccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGa        >  2:2032488‑M2/7‑100 (MQ=255)
                                                                                             nccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGa        >  2:484685‑M2/7‑100 (MQ=255)
                                                                                               cgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTTCTGaaa      >  1:426767‑M2/5‑100 (MQ=255)
                                                                                                gacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAAc     <  1:787112‑M2/97‑1 (MQ=255)
                                                                                                gacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAAc     <  2:2878323‑M2/97‑1 (MQ=255)
                                                                                                   cTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAgg  <  2:1590952/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGG  >  NC_000913/2443720‑2443918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.