New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 225998NA (NA)13 (0.110) 9/170 NT NA noncoding (240/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 226015 NA (NA)noncoding (257/2904 nt) rrlH 23S ribosomal RNA of rrnH operon

Only 100 of 127 total aligned reads displayed.

AGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATG  >  NC_000913/225925‑226114
                                                                                          |                                                                                                   
 ggTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGc                                                                                           <  1:2808112/100‑1 (MQ=32)
 ggTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGc                                                                                           >  1:2071361/1‑100 (MQ=32)
    tAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCa                                                                                        <  1:117535/100‑1 (MQ=33)
      aTGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCaga                                                                                      >  2:2973804/1‑100 (MQ=32)
      aTGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCaga                                                                                      >  1:2687160/1‑100 (MQ=32)
      aTGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCaga                                                                                      >  1:474727/1‑100 (MQ=33)
       tGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCagag                                                                                     >  2:1732077/1‑100 (MQ=17)
       tGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCagag                                                                                     >  2:1269073/1‑100 (MQ=32)
        gAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGc                                                                                    >  2:1665558/1‑100 (MQ=33)
        gAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGc                                                                                    <  1:190831/100‑1 (MQ=33)
         aGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGcc                                                                                   <  2:2497611/100‑1 (MQ=33)
         aGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGcc                                                                                   <  1:2328492/100‑1 (MQ=33)
         aGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGcc                                                                                   <  1:1807795/100‑1 (MQ=33)
          ggCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCt                                                                                  <  1:890330/100‑1 (MQ=33)
          ggCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCt                                                                                  >  2:397453/1‑100 (MQ=32)
           gCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTg                                                                                 <  2:1453026/100‑1 (MQ=32)
           gCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTg                                                                                 >  1:1564543/1‑100 (MQ=33)
             gAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGaa                                                                               >  1:2864513/1‑100 (MQ=32)
             gAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGAGAACGGAGAGGAGCCCAGAGCCTGaa                                                                               >  2:793333/1‑100 (MQ=12)
                   ggggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGAGAGGAACCCAGAGCCt                                                                                  >  2:362475/1‑91 (MQ=12)
                    gggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgt                                                                        >  2:504943/1‑100 (MQ=32)
                    gggAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtg                                                                         <  2:273124/99‑1 (MQ=32)
                       aaCTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtg                                                                     <  1:1191444/100‑1 (MQ=32)
                        aCTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtgt                                                                    >  1:1024342/1‑100 (MQ=32)
                         cTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtgtg                                                                   >  1:1581150/1‑100 (MQ=33)
                         cTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtgtg                                                                   <  2:2577074/100‑1 (MQ=32)
                         cTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGACTGAATCAgtgtgtgag                                                                   >  2:1068636/1‑98 (MQ=17)
                          tGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtgtgt                                                                  >  1:2130171/1‑100 (MQ=33)
                          tGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtgtgt                                                                  <  2:894155/100‑1 (MQ=33)
                          tGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgtgtg                                                                     >  1:430070/1‑97 (MQ=32)
                           gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGtt                                                                 >  2:2404316/1‑100 (MQ=32)
                           gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGtt                                                                 >  1:2457112/1‑100 (MQ=33)
                           gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGtt                                                                 >  1:2168394/1‑100 (MQ=33)
                           gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGtt                                                                 <  2:2071346/100‑1 (MQ=33)
                           gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGtt                                                                 <  1:1396316/100‑1 (MQ=33)
                           gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGtt                                                                 >  2:2318225/1‑100 (MQ=32)
                           gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGCGTGTGtt                                                                 >  2:1741080/1‑100 (MQ=17)
                           gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAACGAACGGGGAGGAGCCCCGAGCCTGAATCAgtgtgcg                                                                     >  2:328884/1‑94 (MQ=255)
                           gAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAACGAACGGGGAGGAGCCCAGAGCCAGAATCAgtgtgtgtg                                                                   >  2:2787274/1‑98 (MQ=12)
                                aTCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTgg                                                            >  1:232604/1‑100 (MQ=32)
                                aTCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGACCGAACGGGGAGGAGCCCAGAGCCTGAATCAGAGAATGTGTTAGt                                                              >  1:136832/1‑98 (MQ=11)
                                 tCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGa                                                           >  1:2424116/1‑100 (MQ=32)
                                 tCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGa                                                           >  1:2054804/1‑100 (MQ=32)
                                 tCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGa                                                           <  1:1923336/100‑1 (MQ=33)
                                   tAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAg                                                         >  1:3158953/1‑100 (MQ=32)
                                    aaGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGGGTGTGTTAGTGGAAGc                                                        >  2:477863/1‑100 (MQ=17)
                                     aGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCg                                                       <  1:1056981/100‑1 (MQ=33)
                                     aGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGAGGAGAACGAACGAGAAAGAACACAAAGCATGAAACAGTGTGTGTGTTAGTGGAAGCg                                                       >  2:1898609/1‑100 (MQ=11)
                                      gTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAATAGCGGCGAGCGAACGGGGAGGAGCACAGAGCCTGAATCAGTGTGTGTGTTAGGGGa                                                           >  2:879868/1‑95 (MQ=255)
                                       tACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTc                                                     <  2:3074233/100‑1 (MQ=33)
                                        aCCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTc                                                     >  2:1986753/1‑99 (MQ=32)
                                        aCCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCt                                                    >  1:941790/1‑100 (MQ=33)
                                        aCCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCAGAATCAGTGTGTGTGTTAGTGGAAGCGTCt                                                    >  2:1520988/1‑100 (MQ=17)
                                         ccccGAGGAAAAGAAATCAACCGAGCTTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGTCCAGAGCCTTAATCAGTGTGTGTGTTAGTGGAAGAGTCTg                                                   <  2:483258/100‑1 (MQ=11)
                                         ccccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTCGCGGCGAGCGAACGGGGGGGGGGCTAGAGCCTGAATCCGTGTGTGTGTTAGTGGAAGCGTCTg                                                   >  2:2604132/1‑100 (MQ=11)
                                         ccccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTg                                                   <  1:1354972/100‑1 (MQ=33)
                                         ccccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTg                                                   <  2:848/100‑1 (MQ=33)
                                         ccccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTg                                                   <  2:152073/100‑1 (MQ=33)
                                         ccccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTAAATCAGTGTGTGTGTTAGTGGAAGCGTCTg                                                   >  2:1530170/1‑100 (MQ=18)
                                         ccccGAGGAAAAGAAATCAACCGAGATTCCCCCAGGAGCGGCGAGCGACCGGGGAGGAGCCCAGGGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTg                                                   <  1:826779/100‑1 (MQ=255)
                                          cccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTgg                                                  >  1:2145455/1‑100 (MQ=33)
                                          cccGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTgg                                                  <  1:2978401/100‑1 (MQ=33)
                                            cGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGaa                                                >  1:5496/1‑100 (MQ=33)
                                             gAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGaaa                                               <  1:2616015/100‑1 (MQ=33)
                                                gAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGGCTGGACAGgc                                            >  2:1898774/1‑100 (MQ=12)
                                                   aaGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgcg                                         >  1:255084/1‑100 (MQ=33)
                                                   aaGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGACTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgcg                                         >  2:1933430/1‑100 (MQ=18)
                                                   aaGAAATCAACCGAGATTCCCCCAGTAGCGGCAAGTGAACAGGGAGGAGCCCAGAGCCAGAATCAGTGTGAGTGTTAGTGGAAGCGTCTGGACAGgcg                                           >  2:761507/1‑98 (MQ=11)
                                                    aGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgcgc                                        >  2:662364/1‑100 (MQ=33)
                                                    aGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgcgc                                        >  1:1525893/1‑100 (MQ=33)
                                                    aGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgcgc                                        >  2:1305259/1‑100 (MQ=33)
                                                    aGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGgcgcgc                                        <  2:2456578/100‑1 (MQ=33)
                                                     gAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGcgcgcg                                       >  1:999467/1‑100 (MQ=33)
                                                          cAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACa                                  >  1:632867/1‑100 (MQ=33)
                                                           aaCCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAg                                 >  1:2548213/1‑100 (MQ=33)
                                                            aCCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAgg                                >  2:2325264/1‑100 (MQ=33)
                                                            aCCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAgg                                <  2:766095/100‑1 (MQ=33)
                                                             ccGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAggg                               >  1:2450703/1‑100 (MQ=33)
                                                             ccGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAggg                               <  1:853606/100‑1 (MQ=33)
                                                              cGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGt                              <  2:2511924/100‑1 (MQ=33)
                                                              cGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGt                              <  1:578555/100‑1 (MQ=33)
                                                                  aTTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACa                          <  1:2960663/100‑1 (MQ=33)
                                                                      ccccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGccc                      <  1:1938592/100‑1 (MQ=32)
                                                                      ccccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGccc                      >  1:3153405/1‑100 (MQ=33)
                                                                      ccccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGCCTGGAAAGGCGCGCGATACAGGGTGACAGccc                      <  1:3081489/100‑1 (MQ=18)
                                                                        ccAGTATCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGcccc                     <  1:131541/99‑1 (MQ=18)
                                                                        ccAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCg                    <  2:959612/100‑1 (MQ=33)
                                                                         cAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGt                   <  2:3153377/100‑1 (MQ=33)
                                                                          aGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGG‑AAGGCGCGCGATACAGGGTGACAGCCCCGTac                 <  1:412773/100‑1 (MQ=17)
                                                                           gTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTac                 <  2:2436586/100‑1 (MQ=33)
                                                                              gcggcgAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTAcaca              <  1:504945/100‑1 (MQ=33)
                                                                               cggcgAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACaa             >  2:1751770/1‑100 (MQ=33)
                                                                                ggcgAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACaaa            >  2:1620385/1‑100 (MQ=33)
                                                                                ggcgAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCATCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACaaa            >  2:2073633/1‑100 (MQ=18)
                                                                                     gcgaACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGc       <  1:848700/100‑1 (MQ=33)
                                                                                     gcgaACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGc       <  2:1564534/100‑1 (MQ=32)
                                                                                      cgaACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGca      >  1:2593967/1‑100 (MQ=33)
                                                                                      agaACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGca      >  2:1450153/2‑100 (MQ=17)
                                                                                        aaCGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGcaca    <  2:2964489/100‑1 (MQ=33)
                                                                                          cGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATg  <  1:1486157/100‑1 (MQ=33)
                                                                                          |                                                                                                   
AGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATG  >  NC_000913/225925‑226114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.