| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2304654 = | NA (NA) | 3 (0.030) | 3/164 | NT | 100% | noncoding (238/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 2304670 = | 0 (0.000) | noncoding (254/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
GCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAG > NC_000913/2304571‑2304769 | gtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgcctta < 1:1216867‑M2/1‑1 (MQ=255)gtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgcctta > 1:3230443‑M2/100‑100 (MQ=255)gtggagcacttcacagcggggtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgcctta < 1:8954‑M2/1‑1 (MQ=255) cccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCAt < 2:525982/100‑1 (MQ=11) ngagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc > 1:2444553‑M2/98‑100 (MQ=255) ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc > 2:883697‑M2/98‑100 (MQ=255) ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc < 2:82566‑M2/3‑1 (MQ=255) ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc > 1:3137439‑M2/98‑100 (MQ=255) ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc > 1:3010785‑M2/98‑100 (MQ=255) ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcgggcgttagatgtcggatgcggcgtaaccgcctta > 1:2123192‑M2/98‑98 (MQ=255) gagcacttcgcagcggtggaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc < 2:1272739‑M2/3‑1 (MQ=255) gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc < 1:2493935‑M2/4‑1 (MQ=255) gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc < 1:970672‑M2/4‑1 (MQ=255) gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc > 2:1721481‑M2/97‑100 (MQ=255) agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg < 1:1231451‑M2/5‑1 (MQ=255) agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg < 2:719585‑M2/5‑1 (MQ=255) agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg < 1:954554‑M2/5‑1 (MQ=255) gcggtgcagagcggtgtgagcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg < 2:2984137‑M2/5‑1 (MQ=255) gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg < 1:34155‑M2/5‑1 (MQ=255) gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcgggcgttagatgtcggatgagccgcaaccgccgtATCCg > 2:2140528‑M2/95‑99 (MQ=255) cacttcacagcggtgtatgcctgataagacgcgccagcgtcgcatcatgcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc < 1:1075647‑M2/7‑1 (MQ=255) cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc < 1:2985430‑M2/7‑1 (MQ=255) cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc < 1:1554211‑M2/7‑1 (MQ=255) cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc < 1:1928549‑M2/7‑1 (MQ=255) cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc < 1:3004345‑M2/7‑1 (MQ=255) cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcggaaccgccttCTCCGAc > 2:2028010‑M2/94‑100 (MQ=255) cactccacagcgggggaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc < 2:287948‑M2/4‑1 (MQ=255) acgtcagagcggtggaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc < 2:2066138‑M2/7‑1 (MQ=255) acgtcacagcggtggaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGacc < 2:3066716‑M2/8‑2 (MQ=255) cacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttCTCCGAc > 2:2635723‑M2/89‑95 (MQ=255) agatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGa > 1:2326582‑M2/28‑100 (MQ=255) gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCtgt > 2:351191‑M2/27‑97 (MQ=255) gtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTg > 1:1643877‑M2/24‑100 (MQ=255) ATCCGACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAg < 2:694445‑M2/100‑1 (MQ=255) ATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATaa < 2:2326566‑M2/99‑1 (MQ=255) | GCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAG > NC_000913/2304571‑2304769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |