New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2393131 =NA (NA)7 (0.060) 6/164 NT NA noncoding (1/36 nt) REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2393163 = NA (NA)noncoding (33/36 nt) REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 154 total aligned reads displayed.

AGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCC  >  NC_000913/2393064‑2393262
                                                                                                   |                                                                                                   
aGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGAcc                                                                                                     <  2:2532842/100‑1 (MQ=255)
 tccgacactaccccaagtacgaagagaattttctgtcgtgagtattcTATTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCt                                                                                                    >  2:729867‑M2/48‑100 (MQ=255)
 gTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCt                                                                                                    >  1:522051/1‑100 (MQ=255)
   cccGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTAc                                                                                                  >  1:3188631/1‑100 (MQ=255)
     cGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGt                                                                                                >  1:1376412/1‑100 (MQ=255)
     cGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGt                                                                                                >  2:1938027/1‑100 (MQ=255)
       tCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTc                                                                                              <  2:2229717/100‑1 (MQ=255)
        gatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagtGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCt                                                                                             >  2:983162‑M1/60‑100 (MQ=255)
        cAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCt                                                                                             <  1:2365240/100‑1 (MQ=255)
        cAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCt                                                                                             <  1:3033513/100‑1 (MQ=255)
          ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                                                           >  1:1148599/1‑100 (MQ=255)
          ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                                                           <  1:96652/100‑1 (MQ=255)
           gACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTtat                                                                                          <  2:2763868/100‑1 (MQ=255)
           gACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTtat                                                                                          >  2:1520099/1‑100 (MQ=255)
             ccGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTatat                                                                                        <  2:147464/100‑1 (MQ=255)
             ccGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTatat                                                                                        >  1:519212/1‑100 (MQ=255)
             ccGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTatat                                                                                        >  1:1490956/1‑100 (MQ=255)
              cGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATg                                                                                       <  2:1833750/100‑1 (MQ=255)
              cGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATg                                                                                       <  1:291635/100‑1 (MQ=255)
              cGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATg                                                                                       >  1:2138240/1‑100 (MQ=255)
              cGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATg                                                                                       <  2:2256506/100‑1 (MQ=255)
               ggATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGc                                                                                      <  1:1474924/100‑1 (MQ=255)
                  ttttCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGccc                                                                                    <  1:2624385/99‑1 (MQ=255)
                  ttttCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCa                                                                                   <  2:1922546/100‑1 (MQ=255)
                    ttCAACGAATTCTTACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgg                                                                                 <  1:833825/100‑1 (MQ=255)
                    ttCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgg                                                                                 >  1:2693658/1‑100 (MQ=255)
                     tCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGTTTATCCGACCTACGTTCTTATATGCCCAggg                                                                                >  2:3000539/1‑100 (MQ=255)
                     tCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAggg                                                                                >  1:2553896/1‑100 (MQ=255)
                      cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                                                               >  1:1672827/1‑100 (MQ=255)
                      cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                                                               >  2:1604948/1‑100 (MQ=255)
                      cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                                                               <  1:2432548/100‑1 (MQ=255)
                      cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                                                               <  1:2806951/100‑1 (MQ=255)
                      cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAggg                                                                                <  2:2764601/99‑1 (MQ=255)
                       aaCGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGc                                                                              >  1:107725/1‑100 (MQ=255)
                       aaCGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGc                                                                              >  1:2303750/1‑100 (MQ=255)
                       aaCGAATTCTCAAGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCGCCGCGAAGACGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                                                               <  1:2029018/99‑1 (MQ=255)
                          ttaaggaatgtgggattgcccctgggcatataagaacgtaggtcggataagccgccttcgcggtgcatccgacCTACGTTCTTATATGCCCAGGGGCAAt                                                                           >  1:1703792‑M2/74‑100 (MQ=255)
                          GAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAAt                                                                           >  2:522049‑M1/1‑100 (MQ=255)
                           AATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGTACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATc                                                                          >  2:1537074‑M1/1‑100 (MQ=255)
                             TTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATccc                                                                        >  1:1570014‑M1/1‑100 (MQ=255)
                              ggattgtgggattgcccctgggcatataagaacgtaggtcggataagccgccttcgcggtgcatccgacCTACGTTCTTATATGCCCAGGGGCAATCCca                                                                       >  1:2293196‑M2/70‑100 (MQ=255)
                               ctcACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCcac                                                                      <  2:757757/100‑1 (MQ=255)
                                  aCGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAAt                                                                   <  2:52594/100‑1 (MQ=255)
                                  aCGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAAt                                                                   <  2:877865/100‑1 (MQ=255)
                                    tgggattgcccctgggcatataagaacgtagGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATcc                                                                 >  1:2293196‑M1/32‑100 (MQ=255)
                                    gACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATcc                                                                 <  2:3159318/100‑1 (MQ=255)
                                    gACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATcc                                                                 <  2:2407031/100‑1 (MQ=255)
                                         aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCTACCTACGTTCTTATATGTCCATGGGCAATCCCACAATCCTTAAc                                                            <  2:1593663/100‑1 (MQ=255)
                                         aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                                                            <  1:2355284/100‑1 (MQ=255)
                                             ttgtctTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACt                                                           <  2:593779/94‑1 (MQ=255)
                                              tcTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAAc                                                       <  1:1938039‑M2/98‑1 (MQ=255)
                                                tgttCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGc                                                     <  2:501829/98‑1 (MQ=255)
                                                tctTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGc                                                     <  1:10937/100‑1 (MQ=255)
                                                tctTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGc                                                     <  1:11606/100‑1 (MQ=255)
                                                 ctTCGGACTGGGGGGAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCa                                                    >  2:686685/1‑100 (MQ=255)
                                                   tCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGt                                                  >  1:83105/1‑100 (MQ=255)
                                                    cGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTa                                                 >  2:2342689/1‑100 (MQ=255)
                                                    cGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTa                                                 <  1:3019448/100‑1 (MQ=255)
                                                     ggACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTAc                                                <  2:2138224/100‑1 (MQ=255)
                                                      gACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTAcc                                               >  1:2120064/1‑100 (MQ=255)
                                                       aCTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCa                                              <  1:77802/100‑1 (MQ=255)
                                                          gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa                                           >  2:3220075/1‑100 (MQ=255)
                                                          gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa                                           >  1:2956408/1‑100 (MQ=255)
                                                          gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa                                           >  1:3019268/1‑100 (MQ=255)
                                                          gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa                                           >  1:897981/1‑100 (MQ=255)
                                                          gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa                                           <  1:907776/100‑1 (MQ=255)
                                                          gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa                                           <  2:825923/100‑1 (MQ=255)
                                                          gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa                                           >  2:1819052/1‑100 (MQ=255)
                                                            gggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAAc                                         <  1:1426405/100‑1 (MQ=255)
                                                             ggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAAc                                         <  1:1660472/99‑1 (MQ=255)
                                                             ggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACa                                        <  2:1056874/100‑1 (MQ=255)
                                                                aGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTg                                     <  2:301956/100‑1 (MQ=255)
                                                                aGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTg                                     <  2:1198005/100‑1 (MQ=255)
                                                                aGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTg                                     <  2:2491924/100‑1 (MQ=255)
                                                                 gtgtCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGc                                    <  2:2692463/100‑1 (MQ=255)
                                                                  tgtCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGcc                                   <  2:696846/100‑1 (MQ=255)
                                                                   gtcggataagccgccttcgcggtgcatccgacCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCa                                  >  2:626181‑M2/33‑100 (MQ=255)
                                                                   GTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGc                                    <  2:438159‑M1/98‑1 (MQ=255)
                                                                      ggataagccgccttcgcggtgcatcagacCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGca                               >  1:1243217‑M2/30‑100 (MQ=255)
                                                                      gataagccgccttcgcggtgcatccgacaCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAATGCCAGca                               >  1:2042609‑M2/30‑100 (MQ=255)
                                                                      GGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGcc                                   <  2:2042628‑M1/96‑1 (MQ=255)
                                                                      GGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGca                               <  1:264213‑M1/100‑1 (MQ=255)
                                                                      GGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGca                               <  2:2042862‑M1/100‑1 (MQ=255)
                                                                           cACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACg                          >  2:1378016/1‑100 (MQ=255)
                                                                           cACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACg                          >  2:2354268/1‑100 (MQ=255)
                                                                           cACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACg                          >  1:2084395/1‑100 (MQ=255)
                                                                            aCCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGa                         >  2:2455863/1‑100 (MQ=255)
                                                                             ccGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGAc                        >  1:3228770/1‑100 (MQ=255)
                                                                                      cggcTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGAt               >  2:1151817/1‑100 (MQ=255)
                                                                                      cggcTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGAt               >  1:1212950/1‑100 (MQ=255)
                                                                                       ggcTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATg              >  2:1029180/1‑100 (MQ=255)
                                                                                           tATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCa          <  1:2042876/100‑1 (MQ=255)
                                                                                            atccgacCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCAt         >  1:1448633‑M2/8‑100 (MQ=255)
                                                                                             tccgacCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATg        <  2:298244‑M2/94‑1 (MQ=255)
                                                                                              ccgacCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATgg       >  2:2271350‑M2/6‑100 (MQ=255)
                                                                                               cgacCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGa      >  2:1274609‑M2/5‑100 (MQ=255)
                                                                                                 acCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATg    >  1:624419‑M2/3‑100 (MQ=255)
                                                                                                  cCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGc   >  2:1334407‑M2/2‑100 (MQ=255)
                                                                                                  cCTACGTTCTTATATGCCCAGGGGAAATCCCACAATCCTTAACCCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGa      <  1:1352909‑M2/96‑1 (MQ=255)
                                                                                                   cTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGcc  >  2:2039966/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
AGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGCC  >  NC_000913/2393064‑2393262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.