BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp	100%		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	148 [0]	[0] 146	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	122 (1.120)	72/162	NT	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913	1979279 =	0 (0.000)	122 (1.120)	72/162	NT	100%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

Only 100 of 146 total aligned reads displayed.

TGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT  >  NC_000913/1979180‑1979378

tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt                                                                                                     >  1:1813088‑M2/100‑100 (MQ=255)

   actcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                  >  1:1064820‑M2/97‑100 (MQ=255)

   actcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                  <  2:2879161‑M2/4‑1 (MQ=255)

    ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                 >  1:545381‑M2/96‑100 (MQ=255)

     tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg                                                                                                <  2:2337750‑M2/6‑1 (MQ=255)

     tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg                                                                                                <  1:2886183‑M2/6‑1 (MQ=255)

      cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                               >  1:776396‑M2/94‑100 (MQ=255)

      cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                               <  1:604458‑M2/7‑1 (MQ=255)

      cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcaaacaaaacactcaattacttaacataaatgTATAAg                                                                                                >  2:2512672‑M2/94‑99 (MQ=255)

       gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                              <  2:658131‑M2/8‑1 (MQ=255)

       gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                              <  1:1482799‑M2/8‑1 (MQ=255)

       gtcactacacgaacagaaaacggacgggggctgcaattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                               <  2:800872‑M2/7‑1 (MQ=255)

          actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                           >  2:3159445‑M2/90‑100 (MQ=255)

            tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacctaacataaatgTATAAGTCATACt                                                                                         >  1:1725105‑M2/88‑100 (MQ=255)

             acacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtt                                                                                        >  2:3139617‑M2/87‑100 (MQ=255)

              cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttt                                                                                       <  2:3240886‑M2/15‑1 (MQ=255)

              cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttt                                                                                       >  1:780276‑M2/86‑100 (MQ=255)

                cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                     >  1:1057236‑M2/84‑100 (MQ=255)

                cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                     >  2:32508‑M2/84‑100 (MQ=255)

                cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                     <  1:369627‑M2/17‑1 (MQ=255)

                cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                     <  1:367053‑M2/17‑1 (MQ=255)

                  cacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                     >  2:212779‑M2/82‑98 (MQ=255)

                      tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATacttttgatttag                                                                               >  1:129104‑M2/78‑98 (MQ=255)

                       acaacggaggggggttgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                              <  1:1127895‑M2/24‑1 (MQ=255)

                       acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                              <  1:1529681‑M2/24‑1 (MQ=255)

                       acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                              <  2:1074037‑M2/24‑1 (MQ=255)

                        caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                             >  1:708493‑M2/76‑100 (MQ=255)

                        caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                             <  1:1126324‑M2/25‑1 (MQ=255)

                           cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTa                                                                          <  2:2088581‑M2/28‑1 (MQ=255)

                           cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTa                                                                          <  1:881165‑M2/28‑1 (MQ=255)

                             gaggggttctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt                                                                         >  2:1892862‑M2/71‑99 (MQ=255)

                              aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                       <  1:1887885‑M2/31‑1 (MQ=255)

                              aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                       <  1:1982737‑M2/31‑1 (MQ=255)

                              aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                       <  1:409128‑M2/31‑1 (MQ=255)

                                 tggtctgcgattttcaataatgcgtgattcatatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                                                    <  1:1892874‑M2/34‑1 (MQ=255)

                                 ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                                                    >  2:2777563‑M2/67‑100 (MQ=255)

                                   ggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc                                                                  <  1:1354850‑M2/36‑1 (MQ=255)

                                   ggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacctaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc                                                                  <  2:1725093‑M2/36‑1 (MQ=255)

                                      tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                               >  1:3166156‑M2/62‑100 (MQ=255)

                                      tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                               >  1:3167723‑M2/62‑100 (MQ=255)

                                       gcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                              <  2:1118932‑M2/40‑1 (MQ=255)

                                       gcgattttcaataatgcgtgatgcaaatcacacaaaacactcaagtacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                              <  2:1117658‑M2/40‑1 (MQ=255)

                                        cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                             <  2:2877640‑M2/41‑1 (MQ=255)

                                          attttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                              <  2:588037‑M2/40‑1 (MQ=255)

                                          attttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                                                           >  1:478587‑M2/58‑100 (MQ=255)

                                           ttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                          >  1:1615673‑M2/57‑100 (MQ=255)

                                             ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                        <  2:2820969‑M2/46‑1 (MQ=255)

                                                aataatgcgtgatgcagatcacgcaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                     >  2:1884466‑M2/52‑100 (MQ=255)

                                                aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                     <  1:1446075‑M2/49‑1 (MQ=255)

                                                 ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                    <  2:3046441‑M2/50‑1 (MQ=255)

                                                   aatgcgtgattcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                  <  1:2453873‑M2/52‑1 (MQ=255)

                                                   aatgcgtgatgcagatcacacaaaacacttaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                  <  2:2949097‑M2/52‑1 (MQ=255)

                                                    atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                 <  1:2039482‑M2/53‑1 (MQ=255)

                                                     tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc                                                <  1:1171342‑M2/54‑1 (MQ=255)

                                                     tgcgtgatgcagatcacacaaaacactcaattacgtaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc                                                <  1:2512690‑M2/54‑1 (MQ=255)

                                                       cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGTGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                              <  1:3241788‑M2/56‑1 (MQ=255)

                                                          gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                           >  2:2197661‑M2/42‑100 (MQ=255)

                                                            tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                         >  2:2983125‑M2/40‑100 (MQ=255)

                                                            tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                         >  1:3072999‑M2/40‑100 (MQ=255)

                                                            tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTCTTGTTTTGGCTGTATTTCAATCTGTTAAAAAGTTTTTtgctacgcta                                         >  2:1472863‑M2/40‑100 (MQ=255)

                                                             gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag                                        >  1:2407381‑M2/39‑100 (MQ=255)

                                                               agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                      >  2:1595488‑M2/37‑100 (MQ=255)

                                                               agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                      <  1:32784‑M2/64‑1 (MQ=255)

                                                               agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                      <  1:213441‑M2/64‑1 (MQ=255)

                                                                gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                     >  1:1176798‑M2/36‑100 (MQ=255)

                                                                  tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag                                    >  1:663562‑M2/34‑99 (MQ=255)

                                                                    ncacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                                 >  2:660716‑M2/32‑100 (MQ=255)

                                                                        aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                              <  2:1942750‑M2/72‑1 (MQ=255)

                                                                         aaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                            <  1:84203‑M2/74‑1 (MQ=255)

                                                                         aaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                            >  2:1072863‑M2/27‑100 (MQ=255)

                                                                          aacacttaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa                           <  2:1149143‑M2/75‑1 (MQ=255)

                                                                          aacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa                           <  1:3139645‑M2/75‑1 (MQ=255)

                                                                           acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                          >  1:2632663‑M2/25‑100 (MQ=255)

                                                                           acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                          >  1:2789613‑M2/25‑100 (MQ=255)

                                                                            cactcaattacttaacataaatgTATAAGTCATACTTATGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAGAATGaaa                         >  2:1739993‑M2/24‑100 (MQ=255)

                                                                             actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                        <  2:776394‑M2/78‑1 (MQ=255)

                                                                             actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                        <  2:2215207‑M2/78‑1 (MQ=255)

                                                                               tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                      <  1:1478151‑M2/80‑1 (MQ=255)

                                                                               tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCCGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                      <  2:392134‑M2/80‑1 (MQ=255)

                                                                                caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                     <  2:2062547‑M2/81‑1 (MQ=255)

                                                                                caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                     <  1:2273412‑M2/81‑1 (MQ=255)

                                                                                caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                     >  1:2616276‑M2/20‑100 (MQ=255)

                                                                                caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                     <  1:1072868‑M2/81‑1 (MQ=255)

                                                                                caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                      <  1:350839‑M2/80‑1 (MQ=255)

                                                                                 aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                    >  1:1843339‑M2/19‑100 (MQ=255)

                                                                                 aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                    <  2:416963‑M2/82‑1 (MQ=255)

                                                                                  attacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaa                   <  2:1176792‑M2/83‑1 (MQ=255)

                                                                                     acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa                >  1:2022557‑M2/15‑100 (MQ=255)

                                                                                     acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa                >  1:1861112‑M2/15‑100 (MQ=255)

                                                                                     acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa                >  2:1581888‑M2/15‑100 (MQ=255)

                                                                                      cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat               >  1:1640874‑M2/14‑100 (MQ=255)

                                                                                      cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat               >  1:2106215‑M2/14‑100 (MQ=255)

                                                                                        taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAtca             <  1:660717‑M2/89‑2 (MQ=255)

                                                                                         aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa            <  2:1843327‑M2/90‑1 (MQ=255)

                                                                                           cataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa          >  1:3239218‑M2/9‑100 (MQ=255)

                                                                                             naaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATcgaaaag        >  1:1414710‑M2/7‑98 (MQ=255)

                                                                                               aatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg      <  2:478585‑M2/96‑1 (MQ=255)

                                                                                                 tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt    <  2:3167695‑M2/98‑1 (MQ=255)

                                                                                                 tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt    <  2:3166128‑M2/98‑1 (MQ=255)

                                                                                                 tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt    <  1:3174445‑M2/98‑1 (MQ=255)

TGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT  >  NC_000913/1979180‑1979378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`