Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,470,410 (T)7→6 coding (1280/1332 nt) gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,470,4040T.97.9% 643.6 / 5.8 143coding (1274/1332 nt)gtrSserotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
Reads supporting (aligned to +/- strand):  ref base T (1/2);  new base . (76/64);  total (77/66)
Fisher's exact test for biased strand distribution p-value = 5.95e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

Only 100 of 163 total aligned reads displayed.

AATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAAT  >  NC_000913/2470305‑2470503
                                                                                                   |                                                                                                   
aaTTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGt                                                                                                     >  1:2270708/1‑100 (MQ=255)
aaTTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGt                                                                                                     >  2:849412/1‑100 (MQ=255)
 aTTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGtt                                                                                                    <  1:1631766/100‑1 (MQ=255)
    ttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttt                                                                                                 <  1:1996455/100‑1 (MQ=255)
    ttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttt                                                                                                 <  1:854503/100‑1 (MQ=255)
      aTGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGtttttta                                                                                               <  2:2794288/100‑2 (MQ=255)
        gtgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaat                                                                                             <  2:2415627/100‑4 (MQ=255)
         tgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaatt                                                                                            <  1:1591503/100‑5 (MQ=255)
         tgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaatt                                                                                            <  1:2335231/100‑5 (MQ=255)
         tgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaatt                                                                                            <  2:1013428/100‑5 (MQ=255)
          gtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaatta                                                                                           >  1:1013421/1‑95 (MQ=255)
           tCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTta                                                                                         <  2:1427440/100‑1 (MQ=255)
            cATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTtat                                                                                        >  2:132964/1‑100 (MQ=255)
            cATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTtat                                                                                        >  2:1285899/1‑100 (MQ=255)
            cATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTtat                                                                                        >  2:734446/1‑100 (MQ=255)
             aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAAttt                                                                                          <  2:2542932/97‑1 (MQ=255)
             aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTtata                                                                                       <  2:37344/100‑1 (MQ=255)
             aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTtata                                                                                       <  2:2566496/100‑1 (MQ=255)
                tttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATaaaa                                                                                    <  1:2242602/100‑1 (MQ=255)
                 ttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaat                                                                                   >  2:1305983/1‑100 (MQ=255)
                    ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaataat                                                                                >  1:91287/1‑100 (MQ=255)
                    ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaataat                                                                                <  1:2729521/100‑1 (MQ=255)
                    ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaataat                                                                                <  2:1408118/100‑1 (MQ=255)
                    ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaataa                                                                                 <  1:2168057/99‑1 (MQ=255)
                      ggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAAtt                                                                               <  2:372038/100‑1 (MQ=255)
                      ggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTc                                                                              <  2:2423501/100‑1 (MQ=255)
                       gAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAaataat                                                                                <  1:2611487/97‑1 (MQ=255)
                       gAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCa                                                                             <  2:2345594/100‑1 (MQ=255)
                         aGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCaaa                                                                           <  1:879942/100‑1 (MQ=255)
                         aGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCaaa                                                                           >  1:521347/1‑100 (MQ=255)
                           gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTCTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGa                                                                         >  2:2267589/1‑100 (MQ=255)
                               taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATc                                                                     >  1:171334/1‑100 (MQ=255)
                               taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATc                                                                     >  1:2480220/1‑100 (MQ=255)
                                agagATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATATTTTAAAGaatt                                                                      >  1:1947267/1‑96 (MQ=255)
                                agagATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCa                                                                    >  2:2755685/1‑100 (MQ=255)
                                agagATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCa                                                                    <  2:756969/100‑1 (MQ=255)
                                agagATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCa                                                                    >  1:756496/1‑100 (MQ=255)
                                   gaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGa                                                                 >  1:1770230/1‑100 (MQ=255)
                                   gaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGa                                                                 >  2:2107447/1‑100 (MQ=255)
                                    aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAc                                                                <  2:1662550/100‑1 (MQ=255)
                                    aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAc                                                                >  2:359799/1‑100 (MQ=255)
                                    aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAc                                                                <  2:253177/100‑1 (MQ=255)
                                    aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAc                                                                <  1:926110/100‑1 (MQ=255)
                                       tAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAAt                                                             <  2:1039766/100‑1 (MQ=255)
                                       tAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAAt                                                             >  1:2328788/1‑100 (MQ=255)
                                        aagcaagcATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATa                                                            >  2:642557/1‑100 (MQ=255)
                                          tctagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGc                                                          <  2:2104636/97‑1 (MQ=255)
                                          gcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAg                                                           >  1:439484/1‑99 (MQ=255)
                                           caagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCg                                                         >  1:57995/1‑100 (MQ=255)
                                            aagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATATAATAATTCAAAGAAATCAAGACAATa                                                            >  1:1173606/1‑96 (MQ=255)
                                            aagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGa                                                        <  2:1061060/100‑1 (MQ=255)
                                            aagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGa                                                        >  2:2019096/1‑100 (MQ=255)
                                             agcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGcaga                                                       >  1:2104621/1‑97 (MQ=255)
                                              gcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATg                                                      <  2:537618/100‑1 (MQ=255)
                                               caTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGt                                                     <  2:950338/100‑1 (MQ=255)
                                                atttatttGGAATGTATTTTTTTTTTTTTTTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGt                                                     >  1:372732/1‑99 (MQ=255)
                                                atttatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTa                                                    >  1:372589/1‑100 (MQ=255)
                                                atttatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTa                                                    <  1:359795/100‑1 (MQ=255)
                                                atttatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTa                                                    >  1:67202/1‑100 (MQ=255)
                                                 tttatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTaa                                                   >  1:720477/1‑100 (MQ=255)
                                                    atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                                <  1:2773538/100‑1 (MQ=255)
                                                    atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                                <  2:588269/100‑1 (MQ=255)
                                                     tttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCa                                               >  1:2377622/1‑100 (MQ=255)
                                                      ttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCAc                                              <  2:1404327/100‑1 (MQ=255)
                                                        ggAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTa                                            >  2:590779/1‑100 (MQ=255)
                                                          aaTGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAg                                          <  2:1317260/100‑1 (MQ=255)
                                                           aTGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAg                                          >  2:652752/1‑100 (MQ=255)
                                                              tATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTa                                      >  2:1248798/1‑100 (MQ=255)
                                                              tATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTa                                      <  2:788302/100‑1 (MQ=255)
                                                              tATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTa                                      <  2:510670/100‑1 (MQ=255)
                                                               aTTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTaa                                     >  1:1873284/1‑100 (MQ=255)
                                                               aTTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTaa                                     >  1:179059/1‑100 (MQ=255)
                                                                     cgttcgACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcg                               <  2:1057041/100‑1 (MQ=255)
                                                                      gttcgACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgc                              >  2:1637841/1‑100 (MQ=255)
                                                                      gttcgACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgc                              <  1:2128802/100‑1 (MQ=255)
                                                                      gttcgACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgc                              >  1:1243908/1‑100 (MQ=255)
                                                                         cgACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGcc                           >  1:1475578/1‑100 (MQ=255)
                                                                          gACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCa                          >  1:2672815/1‑100 (MQ=255)
                                                                          gACCTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCa                          >  2:9872/1‑100 (MQ=255)
                                                                             cTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATc                       >  2:2320163/1‑100 (MQ=255)
                                                                             cTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATc                       >  2:2475699/1‑100 (MQ=255)
                                                                             cTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATc                       >  2:2320342/1‑100 (MQ=255)
                                                                             cTTTGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATc                       >  2:1603238/1‑100 (MQ=255)
                                                                               ttGCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCAt                     >  1:97083/1‑100 (MQ=255)
                                                                                 gCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATgg                   <  2:909879/100‑1 (MQ=255)
                                                                                 gCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATgg                   >  2:2333942/1‑100 (MQ=255)
                                                                                 gCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATgg                   <  2:2328807/100‑1 (MQ=255)
                                                                                 gCTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATgg                   <  1:2538101/100‑1 (MQ=255)
                                                                                  cTTATACATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgc                  >  2:1168930/1‑100 (MQ=255)
                                                                                       aCATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGca             >  1:1126798/1‑100 (MQ=255)
                                                                                        cATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcac            <  2:681779/100‑1 (MQ=255)
                                                                                        cATAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcac            >  1:1430572/1‑100 (MQ=255)
                                                                                          tAACAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCGATCATGGCGCGCACaa          >  1:1659016/1‑100 (MQ=255)
                                                                                            aCAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGc        >  1:2782938/1‑100 (MQ=255)
                                                                                             cAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCt       >  2:948816/1‑100 (MQ=255)
                                                                                             cAGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCt       >  1:1284148/1‑100 (MQ=255)
                                                                                              aGTCGTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCt       <  2:444131/99‑1 (MQ=255)
                                                                                              aGTCGTTTTCTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCta      >  2:1929188/1‑100 (MQ=255)
                                                                                                 cGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCtata    <  1:652746/100‑1 (MQ=255)
                                                                                                   tttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTataat  >  2:866169/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
AATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAAT  >  NC_000913/2470305‑2470503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: