New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3383295139 (1.230)8 (0.080) 8/174 11.6 6.2% intergenic (+28/+35) degS/mdh serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding
?NC_000913 = 3383301 120 (1.210)intergenic (+34/+29) degS/mdh serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3383186‑3383295
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaaccggagCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATCACGCATCA  <  NC_000913/3383301‑3383203
                                                                                                                                                                                                                 
GGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAA                                                                                                               >  1:223437/1‑100
  TGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAA                                                                                                             >  2:2641669/1‑100
   GATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAA                                                                                                            <  2:2152567/100‑1
   GATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAA                                                                                                            >  2:2348215/1‑100
   GATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAA                                                                                                            >  2:368965/1‑100
   GATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGAACAAAAAAAAAA                                                                                                            <  1:2520354/100‑1
     TCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAAC                                                                                                          <  2:1047015/100‑1
     TCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAAC                                                                                                          <  2:1105182/100‑1
     TCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAAC                                                                                                          >  1:1784813/1‑100
     TCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAAC                                                                                                          >  2:815352/1‑100
      CCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACTATTCAGGAATATCCGGCAACCAATTACGTCGTGCTCTCAAAACAAAAAACC                                                                                                         >  1:1614709/1‑100
      CCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCACTTAAGTCGTGCGCTCAAAACAAAAAACC                                                                                                         >  2:2639065/1‑100
      CCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACC                                                                                                         <  2:491218/100‑1
       CCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGTCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCG                                                                                                        <  1:2163588/100‑1
       CCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCG                                                                                                        >  1:1359501/1‑100
       CCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCG                                                                                                        >  1:113371/1‑100
        CTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGG                                                                                                       >  2:2702367/1‑100
        CTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGG                                                                                                       <  2:1456787/100‑1
          GTAGTAGTGATGCGTGATGATAAGCAGTTAATGCTGCAGGTCACCAGTCAGGAATATCCTGCAATCAATTAATTCTTGCGCTCAAAACAAAAAACCGG                                                                                                       >  1:124923/1‑98
            AGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGACAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGCA                                                                                                   >  2:1989954/1‑100
                           TGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGCACAGACTCCGGTTTTT                                                                                    <  2:2777894/100‑1
                            GATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGACAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGCACAGACTCCGGTTTTTT                                                                                   <  1:1989939/100‑1
                                AGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGCACAGACTCCGGTTTTTTGTTT                                                                               <  2:1442738/100‑1
                                 GCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGCACAGACTCCGGTTTTTTGTTTT                                                                              <  1:2688667/100‑1
                                                                                           TCAAAACAAAAAACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATCTTTCTGAATGGTGACCTGCAGCGTTAAC                     >  1:2694061/1‑99
                                                                                              AAACAAAAAACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCT                 >  2:1184624/1‑100
                                                                                               AACAAAAAACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTT                <  2:2694085/100‑1
                                                                                                  AAAAAACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATC             >  1:403214/1‑100
                                                                                                   AAAAACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCA            <  1:1909989/100‑1
                                                                                                   AAAAACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCA            >  2:2545553/1‑100
                                                                                                   AAAAACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCA            <  2:1575890/100‑1
                                                                                                   AAAAACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCA            >  2:2006437/1‑100
                                                                                                   AAAAACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCA            >  1:2435133/1‑100
                                                                                                    AAAACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCAT           >  2:223439/1‑100
                                                                                                     AAACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATC          >  2:244970/1‑100
                                                                                                     AAACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATC          <  1:2014647/100‑1
                                                                                                      AACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATCA         <  2:1419941/100‑1
                                                                                                      AACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATCA         <  2:2799495/100‑1
                                                                                                       ACCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATCAC        <  2:1482361/100‑1
                                                                                                        CCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATCACG       <  2:1370392/100‑1
                                                                                                        CCGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATCACG       <  2:105774/100‑1
                                                                                                         CGGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATCACGC      <  1:1530416/100‑1
                                                                                                          GGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATCACGCA     <  2:547389/100‑1
                                                                                                          GGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATCACGCA     >  1:1327524/1‑100
                                                                                                          GGAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGGTAACTGCTTATCATCACtc      >  1:1687673/1‑97
                                                                                                           GAGCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATCACGCAT    <  1:2791167/100‑1
                                                                                                             GCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATCACGCATCA  >  1:450738/1‑100
                                                                                                                                                                                                                 
GGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3383186‑3383295
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaaccggagCACAGACTCCGGTTTTTTGTTTTGAGCGCACGACTTAATTGGTTGCCGGATATTCCTGAATGGTGACCTGCAGCGTTAACTGCTTATCATCACGCATCA  <  NC_000913/3383301‑3383203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.