Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,494,5430CT20.2% 212.2 / 41.1 94P178L (CCT→CTT) nirBnitrite reductase, large subunit, NAD(P)H‑binding
Reads supporting (aligned to +/- strand):  ref base C (41/34);  new base T (9/10);  total (50/44)
Fisher's exact test for biased strand distribution p-value = 6.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 101 total aligned reads displayed.

GCAAACGCGGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCAGCAAAAACACCCT  >  NC_000913/3494444‑3494642
                                                                                                   |                                                                                                   
gcaAACGCGGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGcccc                                                                                                     <  2:1159774/100‑1 (MQ=255)
gcaAACGCGGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGcccc                                                                                                     <  1:486205/100‑1 (MQ=255)
 caAACGCGGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCt                                                                                                    >  2:2529910/1‑100 (MQ=255)
   aaCGCGGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTAt                                                                                                  >  1:1740502/1‑100 (MQ=255)
   aaCGCGGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTAt                                                                                                  >  1:218525/1‑100 (MQ=255)
     cgcgGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATg                                                                                                 <  1:486351/99‑1 (MQ=255)
     cgcgGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGc                                                                                                >  1:1970788/1‑100 (MQ=255)
     cgcgGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGc                                                                                                <  2:647017/100‑1 (MQ=255)
      gcgGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCt                                                                                               <  2:1866640/100‑1 (MQ=255)
       cgGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCGGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTg                                                                                              <  1:2110012/100‑1 (MQ=255)
       cgGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTg                                                                                              <  1:1193593/100‑1 (MQ=255)
       cgGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCt                                                                                               <  1:1626674/99‑1 (MQ=255)
         gTGCCGTTGTTGGTGGCGGTCTGTTTGGTCTTGAAGCCGCAGGCGCGCTGAAATACTTAGGTATTGAATCCCACGTTATCTAATTTGCCCCTATGCTg                                                                                              <  1:1397901/98‑1 (MQ=255)
         gTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGAt                                                                                            >  2:2004318/1‑100 (MQ=255)
           gCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATgg                                                                                          >  2:1204200/1‑100 (MQ=255)
             cGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCa                                                                                        <  1:145231/100‑1 (MQ=255)
              gttggtGGTGGCGGCCTGTTAGGTCTGGAAGCCGAAAGAACGATAAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAg                                                                                       <  1:2470859/100‑1 (MQ=255)
               ttgttgGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGa                                                                                      >  2:2128045/1‑100 (MQ=255)
               ttgttgGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGa                                                                                      <  2:969905/100‑1 (MQ=255)
                  ttgGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACa                                                                                   <  2:2330861/100‑1 (MQ=255)
                  ttgGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACa                                                                                   <  2:742627/100‑1 (MQ=255)
                    ggcggcggcCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAGGCTCAGGGCTTGAAACCCACCTTACCTGATTTGCCCCTATGCTGATGGCAGAACAGc                                                                                 >  1:1405287/4‑100 (MQ=255)
                     gtggCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCt                                                                                <  2:1010581/100‑1 (MQ=255)
                       ggcggcCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTg                                                                              >  1:2056841/1‑100 (MQ=255)
                       ggcggcCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTg                                                                              >  1:2574526/1‑100 (MQ=255)
                        gcggcCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGa                                                                             >  1:2171979/1‑100 (MQ=255)
                        gcggcCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGa                                                                             <  1:302982/100‑1 (MQ=255)
                        gcggcCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGa                                                                             >  1:540382/1‑100 (MQ=255)
                         cggcCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGAt                                                                            <  1:961961/100‑1 (MQ=255)
                         cggcCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGAt                                                                            >  1:20452/1‑100 (MQ=255)
                          ggcCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATc                                                                           <  2:882089/100‑1 (MQ=255)
                           gcCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCa                                                                          >  1:144558/1‑100 (MQ=255)
                            ccTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAg                                                                         >  2:2582908/1‑100 (MQ=255)
                               gTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATg                                                                      <  1:1255475/100‑1 (MQ=255)
                               gTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATg                                                                      >  2:1391867/1‑100 (MQ=255)
                               gTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATg                                                                      >  1:1480881/1‑100 (MQ=255)
                                 tAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTAAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATggg                                                                    >  1:1697994/1‑100 (MQ=255)
                                   ggTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGggcg                                                                  >  2:284343/1‑100 (MQ=255)
                                   ggTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGggcg                                                                  >  1:666217/1‑100 (MQ=255)
                                    gTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGggcgg                                                                 <  1:1391858/100‑1 (MQ=255)
                                       tGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGa                                                              <  2:2689378/100‑1 (MQ=255)
                                       tGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGa                                                              >  1:106925/1‑100 (MQ=255)
                                       tGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGa                                                              >  2:1481823/1‑100 (MQ=255)
                                       tGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGa                                                              <  2:357710/100‑1 (MQ=255)
                                        ggAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGag                                                             <  1:2267934/100‑1 (MQ=255)
                                         gAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGag                                                             <  1:2266317/99‑1 (MQ=255)
                                          aaGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGagca                                                           <  1:2401904/100‑1 (MQ=255)
                                          aaGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGagca                                                           >  2:2322674/1‑100 (MQ=255)
                                          aaGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGagca                                                           <  1:22362/100‑1 (MQ=255)
                                          aaGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGagca                                                           >  1:2199015/1‑100 (MQ=255)
                                                   gcgcgcTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCg                                                  <  2:2473673/100‑1 (MQ=255)
                                                   gcgcgcTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCg                                                  <  1:2128030/100‑1 (MQ=255)
                                                    cgcgcTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGc                                                 >  2:1306950/1‑100 (MQ=255)
                                                    cgcgcTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGc                                                 >  1:2081011/1‑100 (MQ=255)
                                                      cgcTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCaa                                               >  1:142538/1‑100 (MQ=255)
                                                         tGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCa                                                <  1:1281013/96‑1 (MQ=255)
                                                          gAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATc                                           >  2:683462/1‑100 (MQ=255)
                                                          gAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATc                                           >  1:1082387/1‑100 (MQ=255)
                                                           aaaaaCTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCg                                          <  2:1610803/100‑1 (MQ=255)
                                                             aaaCTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGa                                         <  1:712215/99‑1 (MQ=255)
                                                              aaCTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGaaa                                       <  2:106926/100‑1 (MQ=255)
                                                              aaCTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGaaa                                       >  2:2399626/1‑100 (MQ=255)
                                                               aCTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAg                                      <  1:2529890/100‑1 (MQ=255)
                                                                cTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGt                                     >  1:662608/1‑100 (MQ=255)
                                                                cTTAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGt                                     >  1:665829/1‑100 (MQ=255)
                                                                cTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCaaaaacaacttc                                     >  2:1270847/1‑92 (MQ=255)
                                                                  tAGGTATTGAACCCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTag                                   <  1:1175281/100‑2 (MQ=255)
                                                                  tAGGTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTAt                                   >  2:1650382/1‑100 (MQ=255)
                                                                  tAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTAt                                   >  1:1636657/1‑100 (MQ=255)
                                                                   aGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATg                                  <  2:2698661/100‑1 (MQ=255)
                                                                    ggTATTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGAAAAATCGAAAGTATgg                                 >  1:1197895/1‑100 (MQ=255)
                                                                    ggTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATgg                                 >  2:1691413/1‑100 (MQ=255)
                                                                    ggTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATgg                                 >  1:2098802/1‑100 (MQ=255)
                                                                    ggTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATgg                                 <  1:2273891/100‑1 (MQ=255)
                                                                    ggTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATgg                                 >  2:2547585/1‑100 (MQ=255)
                                                                      tATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGc                               >  1:541292/1‑100 (MQ=255)
                                                                       aTTGAAACCCACGTTATCGAATTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCCAGCATCTGCGTCGCAAAATCGAAAGTATGGGc                               >  1:2377262/1‑99 (MQ=255)
                                                                        ttGAAACCCGCGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCg                              <  2:2551099/99‑1 (MQ=255)
                                                                        ttGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCg                              >  2:46568/1‑99 (MQ=255)
                                                                          gAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTgc                           >  2:950074/1‑100 (MQ=255)
                                                                           aaaCCCACGTTATCGACTTTGCCCTTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTgcg                          <  1:1650370/100‑1 (MQ=255)
                                                                           aaaCCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTgcg                          >  1:327544/1‑100 (MQ=255)
                                                                            aaCCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTgcgc                         >  2:1299454/1‑100 (MQ=255)
                                                                              cccACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGcgcg                        <  1:914649/99‑1 (MQ=255)
                                                                               ccACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGtt                      <  1:2316377/100‑1 (MQ=255)
                                                                               ccACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGtt                      >  1:69827/1‑100 (MQ=255)
                                                                                 aCGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTca                    <  1:2300101/100‑1 (MQ=255)
                                                                                     tATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACAcc                <  2:954626/100‑1 (MQ=255)
                                                                                     tATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACAcc                <  2:2324274/100‑1 (MQ=255)
                                                                                      aTCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGCTGGGCGGCGAGCAGCTGCGTCGCACAATCGCAAGTATGGGCGTGCGCGTTCACACCa               >  1:451682/1‑100 (MQ=255)
                                                                                      aTCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCa               >  2:338497/1‑100 (MQ=255)
                                                                                      aTCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCa               >  2:338738/1‑100 (MQ=255)
                                                                                      aTCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCa               <  2:2016351/100‑1 (MQ=255)
                                                                                        cGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCAGc             <  1:683456/100‑1 (MQ=255)
                                                                                           aTTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCAGCaaa          >  2:2272637/1‑100 (MQ=255)
                                                                                                 cccTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCAGCAAAAACAcc    <  2:1284773/100‑1 (MQ=255)
                                                                                                  ccTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCAGCAAAAACAccc   >  2:1487756/1‑100 (MQ=255)
                                                                                                  ccTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCAGCAAAAACAccc   <  2:2460268/100‑1 (MQ=255)
                                                                                                   cTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCAGCAAAAACACCCt  <  2:540387/100‑1 (MQ=255)
                                                                                                   cTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCAGCAAAAACACCCt  <  2:2171994/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GCAAACGCGGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGCTGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCAGATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCAGCAAAAACACCCT  >  NC_000913/3494444‑3494642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑