| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,792,240 | Δ1 bp | 17.1% | intergenic (‑220/+27) | ydiV ← / ← nlpC | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,792,240 | 0 | T | . | 17.1% | 230.3 / 44.4 | 82 | intergenic (‑220/+27) | ydiV/nlpC | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (30/37); new base . (8/6); total (38/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.25e-01 | |||||||||||
TCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTG > NC_000913/1792142‑1792339 | tCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTa < 1:1759806/100‑1 (MQ=255) tttttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑catc > 2:1727789/1‑100 (MQ=255) tttttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑catc > 2:548826/1‑100 (MQ=255) ttttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTGTGTATGCAAAATACTACGGGAGTGAGGTGTATATGGACGGCGATGTAT‑CATCg < 2:1365356/100‑1 (MQ=255) tttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGc > 1:264292/1‑100 (MQ=255) tttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGc > 1:1695813/1‑100 (MQ=255) ttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGcc < 1:1074427/100‑1 (MQ=255) ttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGcc > 1:2255049/1‑100 (MQ=255) tAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCg < 2:1932698/100‑1 (MQ=255) tAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCg > 2:502121/1‑100 (MQ=255) aGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGt < 2:330929/100‑1 (MQ=39) aGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGt < 1:1757939/100‑1 (MQ=39) gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGATA‑CATCGCCGTc < 1:31147/100‑1 (MQ=255) gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc < 1:1585326/100‑1 (MQ=39) aTTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTcc < 2:1863235/100‑1 (MQ=39) aTTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTcc < 1:1101720/100‑1 (MQ=39) ttATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCACCGTCCa < 1:1715673/100‑1 (MQ=38) tATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCAt < 2:1408100/100‑1 (MQ=255) tATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCAt > 2:1724742/1‑100 (MQ=255) tATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCAt < 1:295541/100‑1 (MQ=255) cTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCAttttt < 2:1571455/100‑1 (MQ=255) cTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCAttttt > 2:2165128/1‑100 (MQ=255) tGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTc < 1:1913327/100‑1 (MQ=255) ttATAAACGAATAGTCCATTTACGGAATTTTTGTCTGCAAAAGACTACTGTATTCAGTAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGAc < 2:2294958/100‑1 (MQ=255) ataAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACAt > 1:1732980/1‑100 (MQ=255) taAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATa > 2:2379422/1‑100 (MQ=255) aaaCGAATAATCCATTTACGGACTTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGGCGGCGATGTAT‑CATCCCCGTCCATTTTTCGACATAc > 2:617149/1‑100 (MQ=255) aaaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATAc < 2:2134762/100‑1 (MQ=255) aaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACt > 1:1821036/1‑100 (MQ=255) aaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGAAGATGTAT‑TATCGACGTCCATTTTTCGACATACt > 2:2181058/1‑100 (MQ=255) aCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTa < 2:2319108/100‑1 (MQ=255) aataatCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGAt < 1:25534/100‑1 (MQ=255) cATTTACGGAATTTTTGTTTGTAAAATACTACTGTATTCAGGAGTAAATGTACGTCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGtctc > 2:2280470/1‑100 (MQ=255) ttACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGcc < 2:2001188/100‑1 (MQ=255) tACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCt > 2:112233/1‑100 (MQ=255) ggAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGcc < 2:1353109/100‑1 (MQ=255) ttGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAAt < 2:1257640/99‑1 (MQ=255) gTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAAtttt < 1:1817040/100‑1 (MQ=255) tCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAAttttt < 2:1236438/100‑1 (MQ=255) cTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTc < 2:1360811/100‑1 (MQ=255) gCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTg < 2:658675/100‑1 (MQ=255) gCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTg < 1:2269723/100‑1 (MQ=255) aTACTCCTGTATTCAGGAGTAAATGGCAGGCTATGTAT‑CATCGTCGTCCATTTTTCGAGCTACGACATTCGTCCCGCTTGCCAGAAAATTTTCTGCCa < 2:2372344/98‑1 (MQ=255) ctactGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGa > 1:2074422/1‑100 (MQ=255) actGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACa > 2:399689/1‑100 (MQ=255) actGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACa > 2:1221818/1‑100 (MQ=255) ctGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACAt > 1:382813/1‑100 (MQ=255) ctGTATCCAGGAGTAAATGGATGGCGCTGTAT‑CAGCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCGGAAATTTTTCTGCCAATAg < 2:1463531/96‑1 (MQ=255) tGTATTCAGGAGTAAATGGACAGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACAtt < 2:1719990/100‑1 (MQ=255) gTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTa > 1:900602/1‑100 (MQ=255) tATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTAt < 2:13334/100‑1 (MQ=255) tATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTAt < 1:502123/100‑1 (MQ=255) aTTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATc < 1:2036171/100‑1 (MQ=255) aTTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATc > 1:447685/1‑100 (MQ=255) ttCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCa > 2:354302/1‑100 (MQ=255) ttCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCa > 1:339211/1‑100 (MQ=255) cAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAg > 1:810957/1‑100 (MQ=255) cAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAg > 2:1710112/1‑100 (MQ=255) aGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGt < 1:2058393/100‑1 (MQ=255) ggAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTg < 1:1033928/100‑1 (MQ=255) ggAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTg < 1:730974/100‑1 (MQ=255) aGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAg > 2:1397472/1‑100 (MQ=255) gTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAgg < 2:1085900/100‑1 (MQ=255) tAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGa < 2:311976/100‑1 (MQ=255) tAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGa < 2:197534/100‑1 (MQ=255) aaTGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAAc < 1:1068702/100‑1 (MQ=255) aaTGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAAc > 2:1218487/1‑100 (MQ=255) tGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGc < 2:852339/100‑1 (MQ=255) ggACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCa < 1:1201931/100‑1 (MQ=255) ggACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCa < 1:194395/100‑1 (MQ=255) ggACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATCTTTCTGCCAATAGACATTATCAAGTGAGGAACGCa > 1:177080/1‑100 (MQ=255) ggACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCa > 1:382075/1‑100 (MQ=39) gACGGCGATGTAT‑CATCGCCGTCCATTTTTTTATATATTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt > 2:5389/1‑100 (MQ=255) gACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt > 1:2372957/1‑100 (MQ=255) gACGGCGATG‑ATACATCGCCGTCCATTTTTCTACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt > 1:715899/1‑100 (MQ=38) gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt > 1:2236596/1‑100 (MQ=39) gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt > 1:1222050/1‑100 (MQ=39) gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt > 1:1848807/1‑100 (MQ=39) gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt > 1:2000857/1‑100 (MQ=39) gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCAAGAAATTTTTTTGAGAATAGACATTATCAAGTGAGGAACGAAt > 2:1468068/1‑100 (MQ=37) aCGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATc < 2:2255029/100‑1 (MQ=255) aCGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATc > 1:33839/1‑100 (MQ=39) tAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTg > 2:2268486/1‑100 (MQ=255) | TCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTG > NC_000913/1792142‑1792339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |