| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3555802 | NA (NA) | 9 (0.120) | 7/162 | NT | NA | noncoding (7/24 nt) | REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3555812 | NA (NA) | noncoding (17/24 nt) | REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
CCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3555697‑3555802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAG < NC_000913/3555812‑3555716 CCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAG > 1:1519509/1‑100CCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAG < 1:1548896/100‑1CCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAACTGCTGAAGATGATAGGGTACGGCGTGTCAGTTTAG > 2:708390/1‑100 CGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGC > 1:46640/1‑100 GCAATCTGTATCAGAAACTCAGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCC > 2:1453932/1‑100 AATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGG < 2:903934/100‑1 TCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGAT < 1:1737855/100‑1 AGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCG > 2:1181978/1‑100 CGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGCT < 1:296080/100‑1 CGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGCT < 1:693151/100‑1 CGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGCT < 1:982419/100‑1 GTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGCTA < 1:1089611/100‑1 gcCCCATCCCCAGGATGCGGTACAACACGCTCAGCAATTGCTGAATATGATGGTGTACGGCGTTTAATTTTAGCCGGATCTGGCGCGTTATCCGGCTAAA < 2:1006960/98‑1 caaaCGCAAGGATGCGGTACAACACGCTCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGCTAAACTT < 1:360406/96‑1 ATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGCTAAACTTAC < 1:665386/100‑1 CAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTG < 1:1181984/100‑1 GCCGGATCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGC > 1:6760/1‑100 GCCGGATCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGC > 1:547937/1‑100 GCCGGATCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGACCACGC > 1:555753/1‑100 GGATCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCACCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCaa > 2:1320009/1‑98 GATCTGGCGCGTTATCCGGCTAAACTTACCCGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAG > 2:1604838/1‑100 GATCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAG < 2:818184/100‑1 CCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3555697‑3555802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatCTGGCGCGTTATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAG < NC_000913/3555812‑3555716 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |