New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3598534	NA (NA)	9 (0.110)	7/164	NT	NA	intergenic (+167/+21)	panM/livJ	PanD autocleavage accelerator, panothenate synthesis/branched‑chain amino acid ABC transporter periplasmic binding protein
	?	NC_000913	= 3598539	NA (NA)					intergenic (+172/+16)	panM/livJ	PanD autocleavage accelerator, panothenate synthesis/branched‑chain amino acid ABC transporter periplasmic binding protein

TGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3598430‑3598534 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaacTTTGGGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAA  <  NC_000913/3598539‑3598441                                                                                                                                                                                                              TGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCG                                                                                                          <  1:1587319/100‑1  GTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCCACGTACTCGATATTAGCAATTTGGCGG                                                                                                         <  1:1666537/100‑1  GTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGG                                                                                                         <  1:726767/100‑1    GTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCA                                                                                                       >  1:1742348/1‑100    GTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCA                                                                                                       >  1:133995/1‑100    GTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCA                                                                                                       >  1:2064981/1‑100        CAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACg                                                                                                    <  2:823370/99‑2                 GATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACTTTGGGTTGCC                                                                                          <  1:1371180/100‑1                  ATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACTTTGGGTTGCCG                                                                                         <  1:2372586/100‑1                   TTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACTTTGGGTTGCCGC                                                                                        <  2:230800/100‑1                   TTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACTTTGGGTTGCCGC                                                                                        <  1:1450417/100‑1                       TTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACTTTGGGTTGCCGCCAAA                                                                                    <  1:1366714/100‑1                       TTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACTTTGGGTTGCCGCCAAA                                                                                    <  1:393031/100‑1                                                                 GCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTA                                          >  1:1786166/1‑100                                                                                       TTAGCAATTTGGCGGCAACCCAAAGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAG                    >  1:981916/1‑100                                                                                          GCAATTTGGCGGCAACCCAAAGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATC                 >  1:1871208/1‑100                                                                                                   CGGCAACTTTGGGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAAT        <  2:1802518/100‑1                                                                                                   CGGCAACTTTGGGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAAT        <  2:2383452/100‑1                                                                                                    GGCAACTTTGGGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATC       >  2:1742334/1‑100                                                                                                     GCAACTTTGGGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCA      <  2:605824/100‑1                                                                                                      CAACTTTGGGTTGCCGCCAAATTGCTAATATCGAGTGCGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAG     >  1:1682953/1‑100                                                                                                      CAACTTTGGGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAG     <  1:1384619/100‑1                                                                                                      CAACTTTGGGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAG     >  2:1482753/1‑100                                                                                                      CAACTTTGGGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTGCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAG     <  1:2324684/100‑1                                                                                                         CTTTGGGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAA  >  1:1467728/1‑100                                                                                                         CTTTGGGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTA   <  2:963676/99‑1                                                                                                                                                                                                              TGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3598430‑3598534 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaacTTTGGGTTGCCGCCAAATTGCTAATATCGAGTACGTTGCTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAA  <  NC_000913/3598539‑3598441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.