| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3625632 | NA (NA) | 5 (0.060) | 4/166 | NT | NA | noncoding (44/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3625670 | NA (NA) | noncoding (82/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
GGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3625531‑3625632‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattGC‑CCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTTATTGAATTTTAGTTGTTTTTAGGCCGGATAAGGCGTTTATGAACTGACCCCCA < NC_000913/3625670‑3625575 GGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAA > 2:938686/1‑100 ACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATT < 1:2272813/100‑1 ccGAGTATCAAAAAGCCGGTTAACTGAAACGGTACAGGTTTTGGAGGTCAGTACATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTc < 2:2168319/98‑2 CTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTG > 1:1981921/1‑100 CTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTG > 2:1916717/1‑100 TGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGC < 1:1171359/100‑1 GTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAAGCTTATAGGGACTACGCATCGGTG < 1:130102/100‑1 GTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGC‑CCGATGCGTAAGCTTATAGGGACTACGCATCGGTGC < 1:1438442/100‑1 GGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGC‑CCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTTAT < 1:1873205/100‑1 GGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGC‑CCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTTATT < 1:982623/100‑1 GGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGC‑CCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTTATT < 1:982694/100‑1 AATTGC‑CCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTTATTGAATTTTAGTTGTTTTTAGGCCGGATAAGGCGTTTATGAACTGACCCCCA > 1:2213971/1‑100 GGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3625531‑3625632‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattGC‑CCGATGCGTAAGCTTATAGGGACTACGCATCGGTGCAATTTATTGAATTTTAGTTGTTTTTAGGCCGGATAAGGCGTTTATGAACTGACCCCCA < NC_000913/3625670‑3625575 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |